View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21436_high_2 (Length: 215)
Name: NF21436_high_2
Description: NF21436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21436_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 34263867 - 34264044
Alignment:
| Q |
22 |
tcagtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaac |
121 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34263867 |
tcagtgtaaatgcttatgaatgactgttgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaac |
34263966 |
T |
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| Q |
122 |
ttttttctattatttcatcccatgacatcggtgtcttttcctcctcaattgaatgagattccgatacagtgatctgtg |
199 |
Q |
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| T |
34263967 |
ttttttctattatttcatcccatgacatcggtgtcttttcctcctcaattgaatgagattccgatacagtgatttgtg |
34264044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 35622991 - 35623098
Alignment:
| Q |
39 |
gaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttttttctattatttca |
138 |
Q |
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|||||| || ||||||||||||||||| || | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
35622991 |
gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca |
35623090 |
T |
|
| Q |
139 |
tcccatga |
146 |
Q |
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|||||||| |
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| T |
35623091 |
tcccatga |
35623098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 14542943 - 14542817
Alignment:
| Q |
22 |
tcagtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaac |
121 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
14542943 |
tcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaac |
14542844 |
T |
|
| Q |
122 |
ttttttctattatttcatcccatgaca |
148 |
Q |
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|||||||||| ||| |||||||||||| |
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|
| T |
14542843 |
ttttttctataattacatcccatgaca |
14542817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 14580644 - 14580770
Alignment:
| Q |
22 |
tcagtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaac |
121 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
14580644 |
tcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaac |
14580743 |
T |
|
| Q |
122 |
ttttttctattatttcatcccatgaca |
148 |
Q |
| |
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|||||||||| ||| |||||||||||| |
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| T |
14580744 |
ttttttctataattacatcccatgaca |
14580770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 37599891 - 37599767
Alignment:
| Q |
22 |
tcagtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaac |
121 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
37599891 |
tcagtgtaaatgcttataaatgactcttgtgcatcaaagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttgataaaa |
37599792 |
T |
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| Q |
122 |
ttttttctattatttcatcccatga |
146 |
Q |
| |
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||||||| |||||||||||||| |
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|
| T |
37599791 |
aaatttctataatttcatcccatga |
37599767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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