View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21436_low_1 (Length: 239)

Name: NF21436_low_1
Description: NF21436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21436_low_1
NF21436_low_1
[»] chr1 (1 HSPs)
chr1 (17-239)||(7594025-7594247)
[»] chr8 (8 HSPs)
chr8 (19-163)||(25865714-25865858)
chr8 (19-163)||(41943958-41944102)
chr8 (27-131)||(44343977-44344081)
chr8 (28-134)||(38799518-38799624)
chr8 (28-134)||(38821893-38821999)
chr8 (28-134)||(43479673-43479779)
chr8 (34-160)||(26592197-26592323)
chr8 (46-134)||(38807037-38807125)
[»] chr2 (5 HSPs)
chr2 (19-163)||(34571416-34571560)
chr2 (19-156)||(34562629-34562766)
chr2 (17-163)||(34578884-34579030)
chr2 (17-163)||(34584633-34584779)
chr2 (28-134)||(13576371-13576477)
[»] chr5 (2 HSPs)
chr5 (28-137)||(12546995-12547104)
chr5 (28-137)||(12531515-12531624)
[»] scaffold0197 (1 HSPs)
scaffold0197 (28-134)||(31034-31140)
[»] chr7 (2 HSPs)
chr7 (28-134)||(3929960-3930066)
chr7 (28-134)||(21317597-21317703)
[»] chr4 (1 HSPs)
chr4 (28-137)||(24860569-24860678)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 7594247 - 7594025
Alignment:
Q  17 cagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594247 cagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgcc 7594148  T
Q  117 aaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttaggatggtcaaggtgcttagggttatggtggattagtatttgggaaggattttagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7594147 aaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttaggatggtcaaggtgcttagggttatggtggattagtatttgggaaggattttagg 7594048  T
Q  217 gttttatgaatttgagtttcttt 239  Q
    |||||||||||||||||||||||    
T  7594047 gttttatgaatttgagtttcttt 7594025  T

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Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 25865714 - 25865858
Alignment:
Q  19 gttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaa 118  Q
    |||||||||||||||||||| ||||||||||| || || |||||||||||||| || ||| ||||||||||||||||||||||||| || ||||||||||    
T  25865714 gttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaa 25865813  T
Q  119 aggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg 163  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25865814 aggatattcagcttgctcgtcgtattcgtggtgaacgtgcttagg 25865858  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 41943958 - 41944102
Alignment:
Q  19 gttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaa 118  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  41943958 gttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaa 41944057  T
Q  119 aggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg 163  Q
    |||| ||||| ||||| || || ||||||||||||||||||||||    
T  41944058 aggacattcaacttgcacgccgtattcgtggtgaacgtgcttagg 41944102  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 44343977 - 44344081
Alignment:
Q  27 acttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatatt 126  Q
    |||||||||||||||||||||||| || || |||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||| |||||||||    
T  44343977 acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T
Q  127 cagct 131  Q
    |||||    
T  44344077 cagct 44344081  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 38799518 - 38799624
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| |||||| |||||||  | ||||| ||||| || || |||||||||||||||||||| || ||||| ||||| ||||| ||||    
T  38799518 cttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc 38799617  T
Q  128 agcttgc 134  Q
    |||||||    
T  38799618 agcttgc 38799624  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 38821999 - 38821893
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| |||||| |||||||  | ||||| ||||| || || |||||||||||||||||||| || ||||| ||||| ||||| ||||    
T  38821999 cttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc 38821900  T
Q  128 agcttgc 134  Q
    |||||||    
T  38821899 agcttgc 38821893  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 43479779 - 43479673
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| |||||||| || || || || || || ||||||||||||||||| ||||||||||| ||||||||||    
T  43479779 cttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattc 43479680  T
Q  128 agcttgc 134  Q
    | |||||    
T  43479679 aacttgc 43479673  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 26592197 - 26592323
Alignment:
Q  34 gaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttg 133  Q
    ||||| || |||||||| || ||||||||||||||||| || || || || || |||||||||||| | || || || ||||| ||||||||||||||||    
T  26592197 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttg 26592296  T
Q  134 ctcgtcgcattcgtggtgaacgtgctt 160  Q
    || | || || ||||| || |||||||    
T  26592297 ctaggcgtatccgtggcgagcgtgctt 26592323  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 38807037 - 38807125
Alignment:
Q  46 gcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttgc 134  Q
    |||||| |||||||  | ||||||||||| |||| ||| ||||||||||||||||| || || || ||||| ||||| ||||| |||||    
T  38807037 gcttacttggttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgc 38807125  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 34571560 - 34571416
Alignment:
Q  19 gttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaa 118  Q
    ||||| ||||||||||||||||| || || ||  ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| || |||||||| |    
T  34571560 gttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgccta 34571461  T
Q  119 aggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg 163  Q
    |||||||||| |||||||| || || |||||||||||||||||||    
T  34571460 aggatattcaacttgctcgccgtatccgtggtgaacgtgcttagg 34571416  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 34562766 - 34562629
Alignment:
Q  19 gttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaa 118  Q
    ||||| ||||||||||||||||| || || ||  ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| || |||||||| |    
T  34562766 gttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgccta 34562667  T
Q  119 aggatattcagcttgctcgtcgcattcgtggtgaacgt 156  Q
    |||||||||| |||||| | || || ||||||||||||    
T  34562666 aggatattcaacttgcttgccgtatccgtggtgaacgt 34562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 34579030 - 34578884
Alignment:
Q  17 cagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgcc 116  Q
    ||||||| ||||||||||||||||  || |||||  ||||||| ||||||||||| |||||| ||||||||||||||||||||||| | ||  |||||      
T  34579030 cagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggt 34578931  T
Q  117 aaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg 163  Q
     ||||||||||| ||||||||||| || ||||||||||| |||||||    
T  34578930 gaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttagg 34578884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 34584779 - 34584633
Alignment:
Q  17 cagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgcc 116  Q
    ||||||| ||||||||||||||||  || |||||  ||||||| ||||||||||| |||||| ||||||||||||||||||||||| | ||  |||||      
T  34584779 cagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggt 34584680  T
Q  117 aaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg 163  Q
     ||||||||||| ||||||||||| || ||||||||||| |||||||    
T  34584679 gaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttagg 34584633  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 13576371 - 13576477
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||    
T  13576371 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattc 13576470  T
Q  128 agcttgc 134  Q
    | |||||    
T  13576471 aacttgc 13576477  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 12547104 - 12546995
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  12547104 cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 12547005  T
Q  128 agcttgctcg 137  Q
    | ||||||||    
T  12547004 aacttgctcg 12546995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 12531515 - 12531624
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  12531515 cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 12531614  T
Q  128 agcttgctcg 137  Q
    | || |||||    
T  12531615 aactcgctcg 12531624  T

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Target: scaffold0197 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 31034 - 31140
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| || || |||||||||||||| || || |||||||| ||||||||||    
T  31034 cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc 31133  T
Q  128 agcttgc 134  Q
    | |||||    
T  31134 aacttgc 31140  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 3930066 - 3929960
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| || || || ||||| |||||||| || || ||||| ||||| |||||||||||||| || || |||||||| ||||||||||    
T  3930066 cttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattc 3929967  T
Q  128 agcttgc 134  Q
    | |||||    
T  3929966 aacttgc 3929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 21317597 - 21317703
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| || || |||||||||||||| || || |||||||| ||||||||||    
T  21317597 cttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc 21317696  T
Q  128 agcttgc 134  Q
    | |||||    
T  21317697 aacttgc 21317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 24860569 - 24860678
Alignment:
Q  28 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 127  Q
    ||||| ||||| ||||| ||||| || |||||| | ||||| || || ||||| || || |||||||||||||| || || |||||||| ||||||||||    
T  24860569 cttcaagaagctgctgaagcttatctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattc 24860668  T
Q  128 agcttgctcg 137  Q
    | || |||||    
T  24860669 aactcgctcg 24860678  T

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