View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_high_12 (Length: 363)
Name: NF21437_high_12
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4285003 - 4284712
Alignment:
| Q |
1 |
ccaaatgaattagaggcaaaatatttgagtgattggtcagagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285003 |
ccaaatgaattagaggcaaaatatttgagggattggtcaaagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
4284904 |
T |
|
| Q |
101 |
catttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactaggaatgagaaaagatacct |
200 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4284903 |
catttagagggttatttcaatgatctcgtttggatatcgtatagcttaaggaatttttagtgtcaaaacaaaaggctactaggaatgagaaaaaatacct |
4284804 |
T |
|
| Q |
201 |
tcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctgaagaaattgagaacaaaaatggtctgatggctt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
4284803 |
tcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctaaagaaattgagaacaaaaatgctctgatggctt |
4284712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 4289702 - 4289414
Alignment:
| Q |
1 |
ccaaatgaattagaggcaaaatatttgagtgattggtcagagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4289702 |
ccaaatgaattagaggcaaaatatttaagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttcaagttccagaagatt |
4289603 |
T |
|
| Q |
101 |
catttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactaggaatgagaaaagatacct |
200 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |||||| ||||||| | | || |
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| T |
4289602 |
catttagaggattatttcaattatctcgtttggatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtaataggaacgagaaaaaaaatct |
4289503 |
T |
|
| Q |
201 |
tcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctgaagaaattgagaacaaaaatggtctgatgg |
289 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||| | |||||| |
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| T |
4289502 |
tcacctgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaagcagaagaaattgagaacaaaaatgctatgatgg |
4289414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4266021 - 4266309
Alignment:
| Q |
1 |
ccaaatgaattagaggcaaaatatttgagtgattggtcagagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
4266021 |
ccaaatgaattagaggcgaaatatttgagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtctgggatcttcaagtcccagaagatt |
4266120 |
T |
|
| Q |
101 |
catttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactaggaatgagaaaagatacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| | | | || |
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| T |
4266121 |
catttagagggttatttcaattatctcgttcgaatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggaatgagaataaaaatct |
4266220 |
T |
|
| Q |
201 |
tcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctgaagaaattgagaacaaaaatggtctgatgg |
289 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||| ||||||| |||| ||||| | |||||||||||||||||||||| | |||||| |
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| T |
4266221 |
tcacctgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaaacagaagaaattgagaacaaaaatgctatgatgg |
4266309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4260475 - 4260763
Alignment:
| Q |
1 |
ccaaatgaattagaggcaaaatatttgagtgattggtcagagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
4260475 |
ccaaatgaattagaggctaaatatttgagtgattggttaaagcaaggtggaaccaacaatagaagtttaatggtttgggatcttgaagttccagaagatt |
4260574 |
T |
|
| Q |
101 |
catttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactaggaatgagaaaagatacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||| | | | || |
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| T |
4260575 |
catttagagggttatttcaattatctcgtttggatatcgaaaagcttaaggaatttgtagtgtcaaaacaaaagggtactaggactgagaataaaaatct |
4260674 |
T |
|
| Q |
201 |
tcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctgaagaaattgagaacaaaaatggtctgatgg |
289 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||||| | ||||| ||||||||||| || |||||||||||||||||| | |||||| |
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| T |
4260675 |
tcacttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgg |
4260763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4298286 - 4298096
Alignment:
| Q |
1 |
ccaaatgaattagaggcaaaatatttgagtgattggtcagagcaaggtggaaccaacaatagaagcttaatggtttgggatcttcaagttccagaagatt |
100 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4298286 |
ccaaacgaattagaggaaaaatatttaagtgattggttaaagcaaggtggaaccaacaataaaagcttaatggtttgggatcttcaagttccagaagatt |
4298187 |
T |
|
| Q |
101 |
catttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactaggaatgagaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||| ||| ||||||||| ||||| |
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|
| T |
4298186 |
catttagagggttatttcaattatctcgttcggatatcaaaaagcttaaggaatttgtagtgttaaaacaagagggtactaggaacgagaa |
4298096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 4255914 - 4255710
Alignment:
| Q |
84 |
tcaagttccagaagattcatttagagggttatttcaattatctcgtttggatatcgtaaagcttaaggaatttatagtgtcaaaacaaaaggctactagg |
183 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
4255914 |
tcaagttcctgaagattcatttagagggttatttgaaatatctcgttcggatatcg-aaagcttaaggaatttgtagtgtcaaaacaaaagggtactagg |
4255816 |
T |
|
| Q |
184 |
aatgagaaaagataccttcacttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctgaagaaattgagaacaaaaatggtc |
283 |
Q |
| |
|
|||||||| | | | ||||| |||||||| ||||| | ||| || |||||||| | ||||| ||||||||||| || ||||||||||||| |||| | |
|
|
| T |
4255815 |
aatgagaataaaaatcttcaattgtcaacatttgtggcatctattgcttatgcattggtatgtagaatgaaagccgagaaaattgagaacaagaatgctt |
4255716 |
T |
|
| Q |
284 |
tgatgg |
289 |
Q |
| |
|
|||||| |
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|
| T |
4255715 |
tgatgg |
4255710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 4285242 - 4285312
Alignment:
| Q |
287 |
tggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgatgtatgtgatgatgtc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4285242 |
tggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgaagtatgtgatgatgtc |
4285312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 4289974 - 4290023
Alignment:
| Q |
289 |
gcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
338 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4289974 |
gcttcagaaagattcttaccagataaatgattgaaatcagcatgagattc |
4290023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 4260203 - 4260154
Alignment:
| Q |
289 |
gcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
338 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||| ||||||||||||| |
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|
| T |
4260203 |
gcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattc |
4260154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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