View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_high_2 (Length: 639)
Name: NF21437_high_2
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 38710796 - 38710183
Alignment:
| Q |
1 |
gagtccccaaaatacatgaacttttgcgacagtaccaaagcggctgaagacctcttctacttccttctcactataacaaaagtttatacatctagatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710796 |
gagtccccaaaatacatgaacttttgcgacagtaccaaagcggcttaagacctcttctacttccttctcactataacaaaagtttatacatctagatatt |
38710697 |
T |
|
| Q |
101 |
agtaaagcagataattaaattgttgaaattaagaatcattctttcttcgaaaagnnnnnnnnntgcatacgtacgtggttgtaaatggcagattatggac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38710696 |
agtaaagcagataatt-----gttgaaattaagaatcattctttcttcgaaaagaaaaaaaaatgcatacgtacgtggttgtaaatggcagattatggac |
38710602 |
T |
|
| Q |
201 |
aaaaacagtcaagagtgatnnnnnnnnctctttatgttattttctcctggagttgatgataactggacatcccatcgatcgacatcttcttcggcctcta |
300 |
Q |
| |
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|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710601 |
aaaaacagtcgagagtgataaaaaa--ctctt-atgttattttctcctggagttgatgataactggacatcccatcgatcgacatcttcttcggcctcta |
38710505 |
T |
|
| Q |
301 |
gatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataaagaaaataataaagtgcttttggtccattaacttaatttcagata |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38710504 |
gatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataa-gaaaataataaagtgattttggtccattaacttaatttcagata |
38710406 |
T |
|
| Q |
401 |
acaatttggtatttcatcnnnnnnnn-catgttattttgatccaaggtttcaaatgtttcctctcggcctttcccattttttcaagttgtgggaattcat |
499 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710405 |
acaatttggtatttcatctttttttttcatgttattttgatccaaggtttcaaatgtttcctctcggcctttcccattttttcaagttgtgggaattcat |
38710306 |
T |
|
| Q |
500 |
aaaaaagggtcaccacattccatatggcaaacatttgacaatctatcaaataattactcaatgagattgtcgttactttcctcgttgtcgccatagcatg |
599 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38710305 |
aaaaaagggtcaccacattccatatggcaaacgtttgacaatctatcaaataattactcaatgagatcgtcgttactttcctcgttgtcgccatagcatg |
38710206 |
T |
|
| Q |
600 |
agatttcttaactggacgtaact |
622 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
38710205 |
agatttcttaactggacgtaact |
38710183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 684965 - 685003
Alignment:
| Q |
372 |
cttttggtccattaacttaatttcagataacaatttggt |
410 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
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| T |
684965 |
cttttagtcccttaacttaatttcagataacaatttggt |
685003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 11362082 - 11362044
Alignment:
| Q |
372 |
cttttggtccattaacttaatttcagataacaatttggt |
410 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
11362082 |
cttttcgtcccttaacttaatttcagataacaatttggt |
11362044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 25061313 - 25061351
Alignment:
| Q |
372 |
cttttggtccattaacttaatttcagataacaatttggt |
410 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
25061313 |
cttttggtcccttaacttaatttcaggtaacaatttggt |
25061351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 32809421 - 32809383
Alignment:
| Q |
372 |
cttttggtccattaacttaatttcagataacaatttggt |
410 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| |
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| T |
32809421 |
cttttggtccattaacttaatttcaggtaacagtttggt |
32809383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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