View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21437_high_22 (Length: 252)
Name: NF21437_high_22
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 16252507 - 16252734
Alignment:
| Q |
10 |
attattctcaagttaattatgctcaattatgcatttgcaataatgttagggtttaattcatatcgaaaaagtttttacaatataaattaatcataattgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16252507 |
attattctcaagttaattatgctcaattatgcatttgcaataatgttagggtttaattcatatcgaaagagtttttacaatataaattaatcataattgt |
16252606 |
T |
|
| Q |
110 |
taggtcattaaaaataactttatcttactcataatcacttcaaaagtcacacacatgattgattgtgaggtgttgacagctacgaagcacagttactcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
16252607 |
taggtcattaaaaataactttatcttactcataatcacttctaaagtcacacacatgattgattgtgatgtgttgacagctacgaagcacagatactcct |
16252706 |
T |
|
| Q |
210 |
cggattaggtgtgtctcagtgtagttat |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
16252707 |
cggattaggtgtgtctcaatgtagttat |
16252734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 32019988 - 32020021
Alignment:
| Q |
78 |
aagtttttacaatataaattaatcataattgtta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32019988 |
aagtttttacaatataaattaatcataattgtta |
32020021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 25640891 - 25640929
Alignment:
| Q |
139 |
cataatcacttcaaaagtcacacacatgattgattgtga |
177 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25640891 |
cataatcactttcaaagtcacacacatgattgattgtga |
25640929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 43244856 - 43244904
Alignment:
| Q |
138 |
tcataatcacttcaaaagtcacacacatgattgattgtgaggtgttgac |
186 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
43244856 |
tcataatcacttctaaagtcacacatattattgattgtgatttgttgac |
43244904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University