View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21437_high_3 (Length: 634)

Name: NF21437_high_3
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21437_high_3
NF21437_high_3
[»] chr4 (16 HSPs)
chr4 (9-402)||(45363509-45363890)
chr4 (9-402)||(45382328-45382709)
chr4 (9-224)||(45374923-45375130)
chr4 (122-402)||(45354030-45354298)
chr4 (122-402)||(45356591-45356859)
chr4 (122-402)||(45370332-45370600)
chr4 (490-617)||(45353902-45354030)
chr4 (490-617)||(45363381-45363509)
chr4 (490-617)||(45356465-45356591)
chr4 (490-617)||(45370206-45370332)
chr4 (490-577)||(45382241-45382328)
chr4 (441-580)||(45388919-45389057)
chr4 (366-436)||(48865824-48865894)
chr4 (360-436)||(48842562-48842638)
chr4 (354-436)||(48872871-48872953)
chr4 (354-436)||(48878175-48878257)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 45363890 - 45363509
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45363890 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45363791  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45363790 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45363699  T
Q  209 ttctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 308  Q
    |||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363698 ttctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 45363604  T
Q  309 aaatccttgcagcttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    |||||||| ||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45363603 aaatccttacagcttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 45382709 - 45382328
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45382709 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45382610  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45382609 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45382518  T
Q  209 ttctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 308  Q
    |||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382517 ttctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 45382423  T
Q  309 aaatccttgcagcttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    |||||||| ||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45382422 aaatccttacagcttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45382328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 45375130 - 45374923
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45375130 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45375031  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45375030 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45374939  T
Q  209 ttctttatcagaattg 224  Q
    ||||||||||||||||    
T  45374938 ttctttatcagaattg 45374923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45354298 - 45354030
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45354298 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45354207  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45354206 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45354112  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45354111 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45354030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45356859 - 45356591
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45356859 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45356768  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45356767 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45356673  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45356672 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45356591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45370600 - 45370332
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45370600 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45370509  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45370508 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45370414  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45370413 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45354030 - 45353902
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||    
T  45354030 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacat 45353931  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||||||||||||||||||||    
T  45353930 gctgactcatcgtgtatataatctgttac 45353902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45363509 - 45363381
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||    
T  45363509 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacat 45363410  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||||||||||||||||||||    
T  45363409 gctgactcatcgtgtatataatctgttac 45363381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45356591 - 45356465
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |    
T  45356591 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacgt 45356492  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||  |||| |||||||||||    
T  45356491 gctgactcatc--gtatctaatctgttac 45356465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45370332 - 45370206
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |    
T  45370332 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacgt 45370233  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||  |||| |||||||||||    
T  45370232 gctgactcatc--gtatctaatctgttac 45370206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 490 - 577
Target Start/End: Complemental strand, 45382328 - 45382241
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382328 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45382241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 580
Target Start/End: Original strand, 45388919 - 45389057
Alignment:
Q  441 ggaaaaacttcataaagcttaaacaaaaatttacacacactataaaagaacaccaagttcaaaccttcacccatagcacctggtggattatatcaaaagg 540  Q
    ||||| |||| || |||||||||||||| |||| ||| |||||| ||| |||||||||||||||| ||||  |||||||| || || || ||||||||||    
T  45388919 ggaaagacttgatcaagcttaaacaaaa-tttaaacaaactatacaagtacaccaagttcaaaccatcacttatagcaccaggaggtttctatcaaaagg 45389017  T
Q  541 aatggtttgataagcttattcgggtttcaggctcaggcgt 580  Q
    ||||||||||||||||| ||  |||||||||| |||||||    
T  45389018 aatggtttgataagcttcttgaggtttcaggcacaggcgt 45389057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 48865824 - 48865894
Alignment:
Q  366 gtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    |||| |||| |||||||||||||||||| |||||||  | || ||||||||||||||||||||||||||||    
T  48865824 gtgtgttgtgaagttattttgacgtgtgttcctccttggatgcattgtttcatgaaattgtaaaatgtcaa 48865894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 48842638 - 48842562
Alignment:
Q  360 tattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||| |||| |||| ||||||| |||| ||||| ||||||| ||||| |||||||||| ||||| |||||||||||    
T  48842638 tattctgtgtgttgtgaagttatcttgatgtgtgttcctcctctggtgcattgtttcataaaattataaaatgtcaa 48842562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 48872871 - 48872953
Alignment:
Q  354 tatacatattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||||||||| || |  ||| ||||||| |||  ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48872871 tatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 48878175 - 48878257
Alignment:
Q  354 tatacatattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||||||||| || |  ||| ||||||| |||  ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48878175 tatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48878257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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