View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_high_4 (Length: 542)
Name: NF21437_high_4
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Original strand, 3640087 - 3640616
Alignment:
| Q |
13 |
gtgatatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttgtggattggctatgaatgggtatgg |
112 |
Q |
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| T |
3640087 |
gtgatatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttgtggattggctatgaatgggtatgg |
3640186 |
T |
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| Q |
113 |
taaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgtaacgtttattggtttgttgtctgcgtgtagccacgttggt |
212 |
Q |
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| T |
3640187 |
taaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgtaacgtttattggtttgttgtctgcgtgtagccacgttggt |
3640286 |
T |
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| Q |
213 |
ttggttagtgagggaatgatgttctttaaagctatgaaagatagttatggcattgtgccgcaaatgagtcattatggttgcatggttgatatgtatggac |
312 |
Q |
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| T |
3640287 |
ttggttagtgagggaatgatgttctttaaagctatgagagatagttatggcattgtgccacaaatgagtcattatggttgcatggttgatatgtatggac |
3640386 |
T |
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| Q |
313 |
gtgctggtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaattca |
412 |
Q |
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| T |
3640387 |
gtgctagtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaactca |
3640486 |
T |
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| Q |
413 |
tggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctagttct |
512 |
Q |
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| T |
3640487 |
tggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctagttct |
3640586 |
T |
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| Q |
513 |
gaaaggagggatgatgctaataatgttcgg |
542 |
Q |
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| T |
3640587 |
gaaaggtgggatgatgctaataatgttcgg |
3640616 |
T |
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