View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_high_6 (Length: 510)
Name: NF21437_high_6
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 28835916 - 28835721
Alignment:
| Q |
18 |
aaatttttgttgcctatagattgatataaagctaccctctttacaagtatcctaatcacaagtaaggcatgtttccaatataagatataatgatagctca |
117 |
Q |
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| T |
28835916 |
aaatttttgttgcctatagattgatataaagctaccctctttacaagtatcctaatcacaagtaaggcatgtttccaatataagatataatgatagctca |
28835817 |
T |
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| Q |
118 |
acacacatatctttttcaccaaaaaccaacccttaagtttatgatgatggcatgcacagttaaaaatatttagttaaaatcatttaattgttttct |
213 |
Q |
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| T |
28835816 |
acacacatatctttttcagcaaaaaccaacccttaagtttatgatgatggcatgcacagttaaaaatatttagttaaaatcatttaattgttttct |
28835721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 28835694 - 28835588
Alignment:
| Q |
241 |
ttgttatcattaat-attttacaactgttttaggttaaatttaaatttcgtgtatttagattagagtattataagatcatgactctacgtaaagctgaca |
339 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28835694 |
ttgttatcattaatcattttacaactgttttaggttaaatttaaatttcgtgtatttagattagagtattataagatcatgactctacgtaaagctgaca |
28835595 |
T |
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| Q |
340 |
tgtaatg |
346 |
Q |
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||||||| |
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| T |
28835594 |
tgtaatg |
28835588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 28835510 - 28835451
Alignment:
| Q |
424 |
tgttctttgagttccacactgtcatgcagaagatcctccttcgttaattatcaacctttg |
483 |
Q |
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| T |
28835510 |
tgttctttgagttccacactgtcatgcagaagatcctccttcgttaattatcaacctttg |
28835451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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