View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_1 (Length: 674)
Name: NF21437_low_1
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 127 - 649
Target Start/End: Original strand, 33054512 - 33055034
Alignment:
| Q |
127 |
tcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatcatgcaaaccctaaaaaa |
226 |
Q |
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| T |
33054512 |
tcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatcatgcaaaccctaaaaaa |
33054611 |
T |
|
| Q |
227 |
caaccttaaaccgcctctttcacttggttggtccgacccggatccatgtaaatggacccacgtttcttgttctgacgacaaccgtgtaacgagaatccaa |
326 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33054612 |
caaccttaaaccgcctctttcgcttggttggtccgacccggatccatgtaaatggacccacgtttcttgttccgacgacaaccgtgtaacgagaatccaa |
33054711 |
T |
|
| Q |
327 |
atcggtcgccagaatctccatggcacacttcctcaaacccttcaaaaccttaccaacttacaacacctagagcttcaattcaacaacttcacaggtccac |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054712 |
atcggtcgccagaatctccatggcacacttcctcaaacccttcaaaaccttaccaacttacaacacctagagcttcaattcaacaacttcacaggtccac |
33054811 |
T |
|
| Q |
427 |
ttccaagcttaaacggtttaaactctcttcaagttttcatggcgagtggtaacagtttttcatcttttcctagtgannnnnnngctggtatgtctcagct |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
33054812 |
ttccaagcttaaacggtttaaactctcttcaagttttcatggcgagtggtaacagtttttcatcgtttcctagtgatttttttgctggtatgtctcagct |
33054911 |
T |
|
| Q |
527 |
tgtttctgttgagattgatgataacccttttgagccatgggagattcctgtgtctttgaaagatgcttcttctcttcagaatttttctgctaataatgct |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054912 |
tgtttctgttgagattgatgataacccttttgagccatgggagattcctgtgtctttgaaagatgcttcttctcttcagaatttttctgctaataatgct |
33055011 |
T |
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| Q |
627 |
aatgtgaagggtaagttacctga |
649 |
Q |
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| T |
33055012 |
aatgtgaagggtaagttacctga |
33055034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 33054385 - 33054427
Alignment:
| Q |
2 |
agttctccccattcttctcactcttattcgtaactaaccaaaa |
44 |
Q |
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| T |
33054385 |
agttctccccattcttctcactcttattcgtaactaaccaaaa |
33054427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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