View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_10 (Length: 406)
Name: NF21437_low_10
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 2 - 406
Target Start/End: Complemental strand, 5330831 - 5330427
Alignment:
| Q |
2 |
ttttgtaaataaaagaacttcaaaaataacactttatcttacattatgaatccaggacgtcaatgcagtagcattagaactgactcaacaacaaagaaac |
101 |
Q |
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| T |
5330831 |
ttttgtaaataaaagaacttcaaaaataacactttatcttacattatgaatccaggacgccaatgcagtagcattagaactgactcaacaacaaagaaac |
5330732 |
T |
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| Q |
102 |
caaaccattagttaaatcaaatcaaaggttttaatttcactaattgtgttaggaaattaatcaaatactaaaaatggtaaagtttttatgggtctattgg |
201 |
Q |
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| T |
5330731 |
caaaccattagttaaatcaaatcaaaggttttaatttcactaattgtgttaggaaattaatcaaatactaataatggtaaagtttttatgggtctattgg |
5330632 |
T |
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| Q |
202 |
attaatatgcttacctagtgctgcaactagtgttactaagttgaccgttagaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatca |
301 |
Q |
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| T |
5330631 |
attaatatgcttacctagtgctgcaactagtgttactaagttgaccgttagaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatca |
5330532 |
T |
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| Q |
302 |
ataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaagagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgatt |
401 |
Q |
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| T |
5330531 |
ataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaagagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgatt |
5330432 |
T |
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| Q |
402 |
gttca |
406 |
Q |
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| T |
5330431 |
gttca |
5330427 |
T |
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