View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21437_low_11 (Length: 402)
Name: NF21437_low_11
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 166 - 391
Target Start/End: Complemental strand, 49124171 - 49123946
Alignment:
| Q |
166 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
49124072 |
T |
|
| Q |
266 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124071 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
49123972 |
T |
|
| Q |
366 |
aagtattttattcaccaaagtttctt |
391 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49123971 |
aagtattttattcaccaaagtttctt |
49123946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 49124380 - 49124225
Alignment:
| Q |
18 |
agttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaagttataga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124380 |
agttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaagttataga |
49124281 |
T |
|
| Q |
118 |
tcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124280 |
tcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
| Q |
225 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
324 |
Q |
| |
|
|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4271421 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
4271520 |
T |
|
| Q |
325 |
gtaaaaaa |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
4271521 |
gtaaaaaa |
4271528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
| Q |
225 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
324 |
Q |
| |
|
|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2807765 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
2807864 |
T |
|
| Q |
325 |
gtaaaaaa |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
2807865 |
gtaaaaaa |
2807872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
24 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
72 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30341295 - 30341349
Alignment:
| Q |
18 |
agttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
72 |
Q |
| |
|
||||| |||| ||||||| ||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
30341295 |
agttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University