View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_12 (Length: 393)
Name: NF21437_low_12
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 43855878 - 43856243
Alignment:
| Q |
18 |
cctttaacatctactttaacatctacaacaaacaggtcttgaaggtttaccatttaccagtaactctcactgcttttcaatttgctattggcacactcct |
117 |
Q |
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| T |
43855878 |
cctttaacatctactttaacatctacaacaaacaggtcttgaaggtttaccatttaccagtaactctcactgcttttcaatttgctattggcacactcct |
43855977 |
T |
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| Q |
118 |
tgtagcattcatgtggggtcttaatctttataaaaggccaaaactcacttcttcacaggtacttattttaatccttgttatatttttactgttctatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43855978 |
tgtagcattcatgtggggtcttaatctttataaaaggccaaaactcacttcttcacaggtacttattttaatccttgttatatttttactgttctatttg |
43856077 |
T |
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| Q |
218 |
ttctgttttgtaatattaatggttctgttatttctctgattttgcagcttttagcaatatttcctttggctttggtacatacattagggaaccttttcac |
317 |
Q |
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| T |
43856078 |
ttctgttttgtaatattaatggttctgttatttctctgattttgcagcttttagcaatatttcctttggctttggtacatacattagggaatcttttcac |
43856177 |
T |
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| Q |
318 |
taacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatcaatggagcctttctt |
383 |
Q |
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| T |
43856178 |
taacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatcaatggagcctttctt |
43856243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 384
Target Start/End: Original strand, 780307 - 780396
Alignment:
| Q |
295 |
catacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatcaatggagcctttcttc |
384 |
Q |
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| T |
780307 |
catacattagggaaccttttgacgaacattagtcttggcaaggttgccgtatctttcactcacaccatcaaatctatggaacctttcttc |
780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 383
Target Start/End: Original strand, 34909985 - 34910098
Alignment:
| Q |
270 |
agcaatatttcctttggctttggtacatacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatca |
369 |
Q |
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| T |
34909985 |
agcaatatttccactcgctatcgtgcatactttggggaatcttttcaccaatatgagtcttggaaaggtggctgtgtcatttactcacacaattaaagct |
34910084 |
T |
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| Q |
370 |
atggagcctttctt |
383 |
Q |
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| T |
34910085 |
atggagcctttctt |
34910098 |
T |
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