View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21437_low_15 (Length: 362)
Name: NF21437_low_15
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 4289678 - 4290023
Alignment:
| Q |
1 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| || |
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| T |
4289678 |
aatattttgcctctaattcatttggatcctttattacttttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtgatactaattcagatac |
4289777 |
T |
|
| Q |
101 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc------- |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289778 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaa |
4289877 |
T |
|
| Q |
194 |
--tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggctt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4289878 |
aatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagctt |
4289977 |
T |
|
| Q |
292 |
ctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
337 |
Q |
| |
|
| |||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
4289978 |
cagaaagattcttaccagataaatgattgaaatcagcatgagattc |
4290023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 4260499 - 4260154
Alignment:
| Q |
1 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||| ||||| |||||||| || |||||||||| || |
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|
| T |
4260499 |
aatatttagcctctaattcatttggatccttaattaattttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtaatactaattcagatac |
4260400 |
T |
|
| Q |
101 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc------- |
193 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4260399 |
ttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaa |
4260300 |
T |
|
| Q |
194 |
--tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggctt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |
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|
| T |
4260299 |
aatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatgaatctgtgtagctt |
4260200 |
T |
|
| Q |
292 |
ctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
337 |
Q |
| |
|
| |||||||||||| |||| |||||||||||| ||||||||||||| |
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|
| T |
4260199 |
cagaaagattcttaccagagaaatgattgaaatcagcatgagattc |
4260154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 4266045 - 4265700
Alignment:
| Q |
1 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| || |
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|
| T |
4266045 |
aatatttcgcctctaattcatttggatccttgattatttttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtaattctaattcagatac |
4265946 |
T |
|
| Q |
101 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc------- |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4265945 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaa |
4265846 |
T |
|
| Q |
194 |
--tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggctt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |
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|
| T |
4265845 |
aatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtttagctt |
4265746 |
T |
|
| Q |
292 |
ctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
337 |
Q |
| |
|
| | |||||||||| | || | |||||||||| |||||| |||||| |
|
|
| T |
4265745 |
cagtaagattcttacctgaaagatgattgaaatcagcatcagattc |
4265700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 4298262 - 4298607
Alignment:
| Q |
1 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaac |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||| || ||||||| ||||||| | |
|
|
| T |
4298262 |
aatatttttcctctaattcgtttggatccttgattacttttctatcatagaaaggacaaaactcatgaggcaaacaaatggatgattctgattcagatat |
4298361 |
T |
|
| Q |
101 |
ttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc------- |
193 |
Q |
| |
|
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4298362 |
ttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaa |
4298461 |
T |
|
| Q |
194 |
--tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggctt |
291 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4298462 |
aatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagctt |
4298561 |
T |
|
| Q |
292 |
ctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
337 |
Q |
| |
|
| ||| |||||||| |||||| || ||||||| ||| || |||||| |
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|
| T |
4298562 |
cagaaggattcttaccagatagataattgaaatcagaatcagattc |
4298607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 162 - 356
Target Start/End: Original strand, 4285109 - 4285312
Alignment:
| Q |
162 |
ccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
253 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgatgtatgtgatga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgaagtatgtgatga |
4285308 |
T |
|
| Q |
353 |
tgtc |
356 |
Q |
| |
|
|||| |
|
|
| T |
4285309 |
tgtc |
4285312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4284979 - 4285111
Alignment:
| Q |
1 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4284979 |
aatattttgcctctaattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtggcaaagaaaggggtgattctaattcagaaac |
4285078 |
T |
|
| Q |
101 |
ttcattttcaagctttctacataggtaagccca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4285079 |
ttcattttcaagctttctacataggtaagccca |
4285111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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