View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_16 (Length: 361)
Name: NF21437_low_16
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 48014572 - 48014239
Alignment:
| Q |
14 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatgcattgtggttacattgtgcatccatgatgactcgag |
113 |
Q |
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| T |
48014572 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatacattgtggttacattgtgcatccatgatgactcgag |
48014473 |
T |
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| Q |
114 |
catcactgtgcagattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttggt |
213 |
Q |
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| T |
48014472 |
catcattgtgcatattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttgat |
48014373 |
T |
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| Q |
214 |
aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcgtaacactcaacaagtgacaacaaatgtatttacaaattgctca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48014372 |
aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcttaacactcaacaagtgacaacaaatgtatttacaaatttctca |
48014273 |
T |
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| Q |
314 |
ctatagaagtcattatcctgactattgtagttga |
347 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
48014272 |
ctatagaagtcattatcctgattattgtagttga |
48014239 |
T |
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