View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_25 (Length: 244)
Name: NF21437_low_25
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 8728745 - 8728857
Alignment:
| Q |
119 |
tgaagtagtttagtgactagag-atttatctctttaaggtgaatacacaaggggttcaaaatcgcatcctaatttatttatacatacattataccgatca |
217 |
Q |
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| T |
8728745 |
tgaagtagtttagtgattagaggatttatctctttaaggtgaataaacaaggtgtttaaaatcgcatcctaatttatttatacatacattatacagatca |
8728844 |
T |
|
| Q |
218 |
attaagttaagtt |
230 |
Q |
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||||||||||||| |
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| T |
8728845 |
attaagttaagtt |
8728857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 25507162 - 25507050
Alignment:
| Q |
119 |
tgaagtagtttagtgactagag-atttatctctttaaggtgaatacacaaggggttcaaaatcgcatcctaatttatttatacatacattataccgatca |
217 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25507162 |
tgaagtagtttagtgattagaggatttatctctttaaggtgaataaacaaggtgtttaaaatcgcatcctaatttatttatacatacattatacagatca |
25507063 |
T |
|
| Q |
218 |
attaagttaagtt |
230 |
Q |
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||||||||||||| |
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| T |
25507062 |
attaagttaagtt |
25507050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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