View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_26 (Length: 244)
Name: NF21437_low_26
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_26 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 32970331 - 32970565
Alignment:
| Q |
10 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaattaaaac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
32970331 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcaatgatcgaataaaagagaactacacataattaataacccaaaaagggcaaatcaaaac |
32970430 |
T |
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| Q |
110 |
aataaacaggcaaccacaataaacatatgcaaaataatcannnnnnnnaggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaaata |
209 |
Q |
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| T |
32970431 |
aataaacaggcaaccacaagaaacatatgcaaaataatcattttttttaggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaacta |
32970530 |
T |
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| Q |
210 |
aattcgtcgacaaaataactcggtcttcatcaccc |
244 |
Q |
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| T |
32970531 |
aattcgtcgacaaaataacccggtcttcatcaccc |
32970565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 3984899 - 3984660
Alignment:
| Q |
10 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgat----gatcgaataaaagagaactacacataattgataacccaaaaagggcaaatta |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3984899 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcgatcgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaatca |
3984800 |
T |
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| Q |
106 |
aaacaataaacaggcaaccacaataaacatatgcaaaataatcannnnnnnna-ggaacaaaataatcaaccattcacgctacacaaacatgtagaatta |
204 |
Q |
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| T |
3984799 |
aaacaataaacaggctaccacaagaaacatatgcaaaataatcattttttttagggaacaaaataatcaaccattcacgctacacaaacatgtagaatta |
3984700 |
T |
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| Q |
205 |
aaataaattcgtcgacaaaataactcggtcttcatcaccc |
244 |
Q |
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| T |
3984699 |
aactaaattcgtcgacaaaataacccggtcttcatcaccc |
3984660 |
T |
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