View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21437_low_3 (Length: 634)

Name: NF21437_low_3
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21437_low_3
NF21437_low_3
[»] chr4 (16 HSPs)
chr4 (9-402)||(45363509-45363890)
chr4 (9-402)||(45382328-45382709)
chr4 (9-224)||(45374923-45375130)
chr4 (122-402)||(45354030-45354298)
chr4 (122-402)||(45356591-45356859)
chr4 (122-402)||(45370332-45370600)
chr4 (490-617)||(45353902-45354030)
chr4 (490-617)||(45363381-45363509)
chr4 (490-617)||(45356465-45356591)
chr4 (490-617)||(45370206-45370332)
chr4 (490-577)||(45382241-45382328)
chr4 (441-580)||(45388919-45389057)
chr4 (366-436)||(48865824-48865894)
chr4 (360-436)||(48842562-48842638)
chr4 (354-436)||(48872871-48872953)
chr4 (354-436)||(48878175-48878257)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 45363890 - 45363509
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45363890 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45363791  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45363790 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45363699  T
Q  209 ttctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 308  Q
    |||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363698 ttctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 45363604  T
Q  309 aaatccttgcagcttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    |||||||| ||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45363603 aaatccttacagcttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 45382709 - 45382328
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45382709 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45382610  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45382609 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45382518  T
Q  209 ttctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 308  Q
    |||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382517 ttctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgc 45382423  T
Q  309 aaatccttgcagcttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    |||||||| ||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45382422 aaatccttacagcttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45382328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 45375130 - 45374923
Alignment:
Q  9 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatactattgattagaagaacattcctctgccttctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45375130 gagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagactattgattagaagaacattcctctgccttctt 45375031  T
Q  109 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||||||||||||||    
T  45375030 ggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttagcaattaaccatcgtactgattgatttacaa 45374939  T
Q  209 ttctttatcagaattg 224  Q
    ||||||||||||||||    
T  45374938 ttctttatcagaattg 45374923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45354298 - 45354030
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45354298 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45354207  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45354206 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45354112  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45354111 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45354030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45356859 - 45356591
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45356859 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45356768  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45356767 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45356673  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45356672 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45356591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 122 - 402
Target Start/End: Complemental strand, 45370600 - 45370332
Alignment:
Q  122 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45370600 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45370509  T
Q  222 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 321  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45370508 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45370414  T
Q  322 ttcatatatattttgtttgatttg-nnnnnnnatatacatattcagtgtattgtcaagttattttgacgtgtgatcctccta 402  Q
    ||||||||||||||||||||||||         ||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  45370413 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctccta 45370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45354030 - 45353902
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||    
T  45354030 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacat 45353931  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||||||||||||||||||||    
T  45353930 gctgactcatcgtgtatataatctgttac 45353902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45363509 - 45363381
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||    
T  45363509 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacat 45363410  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||||||||||||||||||||    
T  45363409 gctgactcatcgtgtatataatctgttac 45363381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45356591 - 45356465
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |    
T  45356591 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacgt 45356492  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||  |||| |||||||||||    
T  45356491 gctgactcatc--gtatctaatctgttac 45356465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 490 - 617
Target Start/End: Complemental strand, 45370332 - 45370206
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggcg-taatgacat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |    
T  45370332 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcaggggttaacgacgt 45370233  T
Q  589 gctgactcatcgtgtatataatctgttac 617  Q
    |||||||||||  |||| |||||||||||    
T  45370232 gctgactcatc--gtatctaatctgttac 45370206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 490 - 577
Target Start/End: Complemental strand, 45382328 - 45382241
Alignment:
Q  490 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382328 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45382241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 580
Target Start/End: Original strand, 45388919 - 45389057
Alignment:
Q  441 ggaaaaacttcataaagcttaaacaaaaatttacacacactataaaagaacaccaagttcaaaccttcacccatagcacctggtggattatatcaaaagg 540  Q
    ||||| |||| || |||||||||||||| |||| ||| |||||| ||| |||||||||||||||| ||||  |||||||| || || || ||||||||||    
T  45388919 ggaaagacttgatcaagcttaaacaaaa-tttaaacaaactatacaagtacaccaagttcaaaccatcacttatagcaccaggaggtttctatcaaaagg 45389017  T
Q  541 aatggtttgataagcttattcgggtttcaggctcaggcgt 580  Q
    ||||||||||||||||| ||  |||||||||| |||||||    
T  45389018 aatggtttgataagcttcttgaggtttcaggcacaggcgt 45389057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 48865824 - 48865894
Alignment:
Q  366 gtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    |||| |||| |||||||||||||||||| |||||||  | || ||||||||||||||||||||||||||||    
T  48865824 gtgtgttgtgaagttattttgacgtgtgttcctccttggatgcattgtttcatgaaattgtaaaatgtcaa 48865894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 48842638 - 48842562
Alignment:
Q  360 tattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||| |||| |||| ||||||| |||| ||||| ||||||| ||||| |||||||||| ||||| |||||||||||    
T  48842638 tattctgtgtgttgtgaagttatcttgatgtgtgttcctcctctggtgcattgtttcataaaattataaaatgtcaa 48842562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 48872871 - 48872953
Alignment:
Q  354 tatacatattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||||||||| || |  ||| ||||||| |||  ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48872871 tatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 48878175 - 48878257
Alignment:
Q  354 tatacatattcagtgtattgtcaagttattttgacgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 436  Q
    ||||||||||| || |  ||| ||||||| |||  ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48878175 tatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48878257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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