View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21437_low_5 (Length: 527)

Name: NF21437_low_5
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21437_low_5
NF21437_low_5
[»] chr3 (17 HSPs)
chr3 (11-203)||(14856837-14857038)
chr3 (342-508)||(14856159-14856325)
chr3 (342-479)||(20020216-20020353)
chr3 (22-172)||(19967195-19967353)
chr3 (18-172)||(20020925-20021087)
chr3 (351-479)||(19743586-19743709)
chr3 (236-342)||(20020483-20020589)
chr3 (110-172)||(19962601-19962663)
chr3 (110-172)||(20027740-20027802)
chr3 (33-105)||(19962507-19962579)
chr3 (236-344)||(19967692-19967800)
chr3 (236-347)||(20027290-20027401)
chr3 (33-105)||(20027824-20027896)
chr3 (236-344)||(19962999-19963107)
chr3 (415-503)||(19963305-19963393)
chr3 (415-503)||(20027007-20027095)
chr3 (397-501)||(19967980-19968084)
[»] chr6 (1 HSPs)
chr6 (174-207)||(266388-266421)
[»] chr4 (2 HSPs)
chr4 (170-203)||(35615451-35615484)
chr4 (175-207)||(44356676-44356708)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 14857038 - 14856837
Alignment:
Q  11 cagagacgacacttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc- 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  14857038 cagagacgacacttattctcttacaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagtgaagtacaatgggtggagaactcca 14856939  T
Q  110 -------aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaagacttaatagcagttttaa-cccctaactt 201  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||| ||||||||||    
T  14856938 caagaagaatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaaggtttaatagcagttataaccccctaactt 14856839  T
Q  202 tc 203  Q
    ||    
T  14856838 tc 14856837  T

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Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 342 - 508
Target Start/End: Complemental strand, 14856325 - 14856159
Alignment:
Q  342 ttggacttcagagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatg 441  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  14856325 ttgggctttagagaggtttcaagcattgacgccacacccttatggaaaagggcaccatgttgtaccaaaggtggctagatggggtggaatagaaatgatg 14856226  T
Q  442 aaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14856225 aaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtgaaagccat 14856159  T

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Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 342 - 479
Target Start/End: Complemental strand, 20020353 - 20020216
Alignment:
Q  342 ttggacttcagagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatg 441  Q
    |||| ||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20020353 ttgggctttagagaggtttcaagcactgaagccacgcccttatggaaaagggtatcatggtttaccaaaggtggctagatggggtggaatagaaatgatg 20020254  T
Q  442 aaaactaaagtcttgaaaaaggtcatggattgtgcagg 479  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20020253 aaaactaaaatcttgaaaaaggtcatggattgtgcagg 20020216  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 19967195 - 19967353
Alignment:
Q  22 cttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc--------aatg 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||  ||        ||||    
T  19967195 cttattctcttccaccccatttctctatttcctttcaaaccaccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgcaagatgaatg 19967294  T
Q  114 gaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 172  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  19967295 gaagaaatgggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaa 19967353  T

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Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 20021087 - 20020925
Alignment:
Q  18 gacacttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc-------- 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  ||||||||||| ||||            
T  20021087 gacactgattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagttaagtattatgggtggagagctccacaagaag 20020988  T
Q  110 aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 172  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||    
T  20020987 aatggaagaaatgggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaa 20020925  T

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Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 19743709 - 19743586
Alignment:
Q  351 agagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatgaaaactaaa 450  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||     ||||||||||||||||||||    
T  19743709 agagaggtttcaagcattgaagccacgcccttatggcaaagggcatcacggtttaccaaaggtggctagatgggg-----tagaaatgatgaaaactaaa 19743615  T
Q  451 gtcttgaaaaaggtcatggattgtgcagg 479  Q
     ||||||||||||||||||||||||||||    
T  19743614 atcttgaaaaaggtcatggattgtgcagg 19743586  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 20020589 - 20020483
Alignment:
Q  236 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 335  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||    
T  20020589 gtttattggttatcaaggtttgtatttccttcagattcttatgataccatttccaaagctgtttttcctattgcaatacgtttagctcatggaaataaga 20020490  T
Q  336 tagctct 342  Q
    |||||||    
T  20020489 tagctct 20020483  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 19962601 - 19962663
Alignment:
Q  110 aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 172  Q
    ||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  19962601 aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa 19962663  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 20027802 - 20027740
Alignment:
Q  110 aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 172  Q
    ||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  20027802 aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa 20027740  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 19962507 - 19962579
Alignment:
Q  33 ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa 105  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||| |||| ||||||| ||| |||||||    
T  19962507 ccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaa 19962579  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 19967692 - 19967800
Alignment:
Q  236 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 335  Q
    |||||||||||||||||||| |||||||||  | ||||| ||||||| ||||| ||| ||| | | ||||| ||||||| ||||||||||||||||   |    
T  19967692 gtttattggttatcaaggtttgtttttcctgaagattctcatgatactatttcgaaaactgttatccctattgcaatacttttagctcatggaaatagaa 19967791  T
Q  336 tagctcttg 344  Q
    |||||||||    
T  19967792 tagctcttg 19967800  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 20027401 - 20027290
Alignment:
Q  236 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 335  Q
    ||||||||||||  |||||| |||||||||  | ||||||||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||||   |    
T  20027401 gtttattggttacaaaggtttgtttttcctgaagattcttatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa 20027302  T
Q  336 tagctcttggac 347  Q
    ||||||||||||    
T  20027301 tagctcttggac 20027290  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 20027896 - 20027824
Alignment:
Q  33 ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa 105  Q
    ||||||| ||||||||||| ||||||||||||||| |||| | ||||| |||| ||||||||||| |||||||    
T  20027896 ccaccccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaa 20027824  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 19962999 - 19963107
Alignment:
Q  236 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 335  Q
    ||||||||||||  |||||| |||||||||  | ||||| ||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||||   |    
T  19962999 gtttattggttacaaaggtttgtttttcctgaagattctcatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa 19963098  T
Q  336 tagctcttg 344  Q
    |||||||||    
T  19963099 tagctcttg 19963107  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 19963305 - 19963393
Alignment:
Q  415 gctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaa 503  Q
    ||||||||||||||| || |  ||||||||| ||||  ||||||| ||| | ||||||||||||||||||  |||| |||| |||||||    
T  19963305 gctagatggggtggagtaaacgtgatgaaaaataaaaacttgaaagaggacttggattgtgcaggatttagaaatggatttttgtggaa 19963393  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 503
Target Start/End: Complemental strand, 20027095 - 20027007
Alignment:
Q  415 gctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaa 503  Q
    ||||||||||||||| || |  ||||||||| ||||  ||||||| ||| | ||||||||||||||||||  |||| |||| |||||||    
T  20027095 gctagatggggtggagtaaacgtgatgaaaaataaaaacttgaaagaggacttggattgtgcaggatttagaaatggatttttgtggaa 20027007  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 501
Target Start/End: Original strand, 19967980 - 19968084
Alignment:
Q  397 catggtgtaccaaagttggctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttc 496  Q
    |||||| |||||||| | ||||||||||||||| || ||||   ||||| |||   ||||||||||| | ||||||||||||| ||| | |||| ||||     
T  19967980 catggtttaccaaaggtagctagatggggtggagtaaaaataccgaaaaataagaacttgaaaaaggacttggattgtgcaggttttgaaaatggatttt 19968079  T
Q  497 tgtgg 501  Q
    |||||    
T  19968080 tgtgg 19968084  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 266421 - 266388
Alignment:
Q  174 acttaatagcagttttaacccctaactttctcaa 207  Q
    |||||||| |||||||||||||||||||||||||    
T  266421 acttaatatcagttttaacccctaactttctcaa 266388  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 35615484 - 35615451
Alignment:
Q  170 gaagacttaatagcagttttaacccctaactttc 203  Q
    |||||||||||||||||||| |||||||||||||    
T  35615484 gaagacttaatagcagttttcacccctaactttc 35615451  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 44356708 - 44356676
Alignment:
Q  175 cttaatagcagttttaacccctaactttctcaa 207  Q
    |||||||||||||||| ||||||||||||||||    
T  44356708 cttaatagcagttttagcccctaactttctcaa 44356676  T

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