View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_7 (Length: 473)
Name: NF21437_low_7
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 5462424 - 5462798
Alignment:
| Q |
19 |
caaacactatcactaggaata---ataaattgtgttccacttatgtaacatctttcacttcaccaccacaatccttgtgaactttcaatcaccaattcat |
115 |
Q |
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| T |
5462424 |
caaacactatcactaggaataataataaattgtgttccacttatgtaacatctttcacttcaccaccacaatccttgtgaactttcaatcaccaattcat |
5462523 |
T |
|
| Q |
116 |
cacttaccattggctaaacaaaagctataacaacttttcatttatttatttactcttccnnnnnnncccctatcttcttggtagtcacttgcataaactt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5462524 |
cacttaccattggctaaacaaaagctataacaacttttcatttatttatttactcttcctttttttcccctatcttcttggtagtcacttgcataaactt |
5462623 |
T |
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| Q |
216 |
ttttgttgttgggtactaaattaaataccaaatcattctactaaaaaacaataataatttctcaatagaaacnnnnnnnnnnnntcctataggctataat |
315 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
5462624 |
ttttgttgttgggtactaaa-tcaataccaaatcattctactaaaaaacaataataatttctcaatagaaac-aaaaaaaaaaatcatataggctataat |
5462721 |
T |
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| Q |
316 |
aatccaatcagcaattaaataaacaccaatcaaattaattttcttgtatataaaaatcacaaactaattaatgttga |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5462722 |
aatccaatcagcaattaaataaacaccaatcaaattaattttcttgtatataaaaatcacaaactaattaaggttga |
5462798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 5462787 - 5462839
Alignment:
| Q |
403 |
aattaaggttgacgtagcttttgtcccggtggaaaatcttcaatgttcatctc |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5462787 |
aattaaggttgacgtagcttttgtcccggtggaaaatcttcaatgttcatctc |
5462839 |
T |
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