View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21437_low_8 (Length: 428)
Name: NF21437_low_8
Description: NF21437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21437_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 53 - 411
Target Start/End: Complemental strand, 19887841 - 19887483
Alignment:
| Q |
53 |
gactttggtgacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggtc |
152 |
Q |
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| T |
19887841 |
gacttcggtgacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggcc |
19887742 |
T |
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| Q |
153 |
taaacctcgatgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggtgctgcggatgttaacta |
252 |
Q |
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| T |
19887741 |
taaaccttgatgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggggctgcggatgttaacta |
19887642 |
T |
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| Q |
253 |
cccggctggacctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcctaca |
352 |
Q |
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| T |
19887641 |
cccggctggacctgccgggaaaacttcccttcatgtggctgccgagatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcccaca |
19887542 |
T |
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| Q |
353 |
gttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgattt |
411 |
Q |
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| T |
19887541 |
gttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgattt |
19887483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 62 - 411
Target Start/End: Original strand, 35319305 - 35319654
Alignment:
| Q |
62 |
gacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggtctaaacctcg |
161 |
Q |
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| T |
35319305 |
gaccttgaagaccagaaaatccgtcggatgagacgtgccctcgactcctcagacgttgaactagtgaaactcatggtaatgggagaaggcctaaacctcg |
35319404 |
T |
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| Q |
162 |
atgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggtgctgcggatgttaactacccggctgg |
261 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || ||||||| ||||||||| | | ||||||||||| || |||||||||| ||||||||| |
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| T |
35319405 |
atgaagcattggcattaccttatgccgttgagaattgcagtagagaagttgtgaaagccttattggaactcggtgcagccgatgttaacttcccggctgg |
35319504 |
T |
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| Q |
262 |
acctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcctacagttagaacc |
361 |
Q |
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|| |||| ||||| | ||||| | || || || ||||| || ||||| |||||||| |||||||| |||||||| || || || | || ||||| |
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| T |
35319505 |
tccaaccggtaaaaccccgcttcacattgcagcggagatggtctcaccggatatggtggctgttttgctcgaccaccacgctgacccaaatgtgagaaca |
35319604 |
T |
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| Q |
362 |
gttgacggtgtcacacctttggatatacttagaaccctaacctctgattt |
411 |
Q |
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||||| ||||| ||||| ||||| || || ||||||||||| || ||||| |
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| T |
35319605 |
gttgatggtgttacaccattggacattctaagaaccctaacttcggattt |
35319654 |
T |
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