View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_high_15 (Length: 334)

Name: NF21438_high_15
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_high_15
NF21438_high_15
[»] chr1 (5 HSPs)
chr1 (14-272)||(3400158-3400416)
chr1 (82-315)||(42606306-42606539)
chr1 (223-315)||(3400031-3400123)
chr1 (90-300)||(27120915-27121129)
chr1 (40-155)||(13117050-13117169)
[»] chr3 (8 HSPs)
chr3 (14-272)||(20000241-20000499)
chr3 (27-251)||(8820713-8820938)
chr3 (223-315)||(20000114-20000206)
chr3 (23-169)||(31982185-31982332)
chr3 (58-132)||(7850830-7850904)
chr3 (241-315)||(7851088-7851162)
chr3 (245-294)||(31981950-31981999)
chr3 (223-275)||(8820992-8821044)
[»] scaffold0001 (2 HSPs)
scaffold0001 (18-251)||(509712-509945)
scaffold0001 (235-315)||(509606-509686)
[»] chr8 (5 HSPs)
chr8 (18-275)||(38809836-38810094)
chr8 (58-197)||(33933248-33933387)
chr8 (223-315)||(38810084-38810176)
chr8 (248-315)||(1807289-1807356)
chr8 (237-275)||(33933422-33933460)
[»] chr4 (7 HSPs)
chr4 (58-302)||(20634546-20634790)
chr4 (18-272)||(40287085-40287339)
chr4 (110-315)||(36010787-36010992)
chr4 (50-275)||(44078866-44079095)
chr4 (223-290)||(44079085-44079152)
chr4 (237-312)||(40287346-40287421)
chr4 (241-302)||(22466359-22466420)
[»] chr7 (2 HSPs)
chr7 (59-263)||(18573355-18573559)
chr7 (223-294)||(18573158-18573229)
[»] chr2 (6 HSPs)
chr2 (40-272)||(3470403-3470632)
chr2 (22-198)||(19038499-19038677)
chr2 (65-197)||(12529974-12530105)
chr2 (230-293)||(12530179-12530244)
chr2 (24-148)||(42494169-42494293)
chr2 (223-293)||(3470298-3470368)
[»] chr6 (9 HSPs)
chr6 (40-157)||(34220276-34220393)
chr6 (60-197)||(28549941-28550078)
chr6 (52-182)||(20130182-20130312)
chr6 (52-182)||(22202558-22202688)
chr6 (52-170)||(20087748-20087865)
chr6 (92-153)||(22749100-22749161)
chr6 (220-272)||(34220478-34220530)
chr6 (238-294)||(20088038-20088094)
chr6 (223-275)||(34220439-34220491)
[»] chr5 (4 HSPs)
chr5 (88-274)||(5538867-5539051)
chr5 (223-315)||(5539042-5539134)
chr5 (242-275)||(21485106-21485139)
chr5 (242-295)||(25699468-25699521)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 3400416 - 3400158
Alignment:
Q  14 tactaggcgtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcagga 113  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3400416 tactaggcgcatggagctgatcaagattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagggtacacagctcacgtcatttgtccgtgcagga 3400317  T
Q  114 cgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatg 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3400316 cgcgtggcacgttatgagatgctctcaagaggaggaccacaatgttacttggacaacgacgtgagagagttctagtgaagttgatggtggtgatcacatg 3400217  T
Q  214 acttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagct 272  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||    
T  3400216 acttagacaatcaaactgagctaagcaggtggagctcacatgacctgaacgatcaagct 3400158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 82 - 315
Target Start/End: Complemental strand, 42606539 - 42606306
Alignment:
Q  82 gtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagaga 181  Q
    ||||||||||||||||| |||||||||||| |||  |||  ||||||||||||| |||||||||||||||||||||||  ||| ||||| || | |||||    
T  42606539 gtacacagctcacgtcacttgtccgtgcagaacgtatggagcgttatgagataccctcaagaggaggaccacaatgttgtttggacaacgacttaagaga 42606440  T
Q  182 gtgctagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtac 281  Q
    | |||| ||  ||| |||||||   ||||||||| |  || ||||||||||  |||| || || || ||| ||||||||||| |||||| |||| |||||    
T  42606439 gagctaatggcgttcatggtggaactcacatgacctgaacgatcaaactgaactaagaagatgaagttcacgtgacctgaacgatcaagttgagttgtac 42606340  T
Q  282 atgttgaatagtcgatgtatataggagtccacgt 315  Q
    || |||||||||| |||||||   ||||||||||    
T  42606339 atattgaatagtcaatgtataggagagtccacgt 42606306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 3400123 - 3400031
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||| ||||||||| ||||||||||    
T  3400123 atcaagctgagctaagcaggtggagctcacgtgacctgaacgatcaagctaagttgtacatgttgaatagtcaatgtatataagagtccacgt 3400031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 300
Target Start/End: Complemental strand, 27121129 - 27120915
Alignment:
Q  90 ctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccac----aatgttacttgaacaacaacgtgagagagtgc 185  Q
    ||||| ||| |||| |||||||||| | ||||||||||||||| ||  ||||||||||||||||    || |||  ||| |||| ||| ||  |||| ||    
T  27121129 ctcacatcacttgttcgtgcaggacacatggcacgttatgagacaccttcaagaggaggaccacgtacaacgttgtttggacaataacctgctagagagc 27121030  T
Q  186 tagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgt 285  Q
    ||||||||||||   ||| | |||| |||| |  || ||||| ||||| |||||||||||||||||  |||||| ||  |||||||| || |||||||||    
T  27121029 tagtgatgttgacaatggagctcacgtgacctgaacgatcaagctgagctaagcaggtggagctcacatgaccttaatgatcaagctaagttgtacatgt 27120930  T
Q  286 tgaatagtcgatgta 300  Q
    ||||||||| |||||    
T  27120929 tgaatagtcaatgta 27120915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 13117169 - 13117050
Alignment:
Q  40 ttccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggc-----acgttatgagata 134  Q
    ||||||||| ||||||||| || || |||| |||||||||  ||||||| ||||||||| ||||||||| ||||||||||||     | |||||||||||    
T  13117169 ttccttgcattgctcgtccatataatgcgcatggagtcaaaggtacacaactcacgtcacttgtccgtgaaggacgcgtggcgcgttatgttatgagata 13117070  T
Q  135 ctctcaagaggaggaccacaa 155  Q
    | |||||||||||||||||||    
T  13117069 c-ctcaagaggaggaccacaa 13117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 20000499 - 20000241
Alignment:
Q  14 tactaggcgtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcagga 113  Q
    ||||||| | |||||||||||||| ||| |||||||||||||| |||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||    
T  20000499 tactaggtgcgtggagctgatcaagatttcttgcagtgctcgttcgtacaagacgtgtggagtcaagggtacacaactcacgtcatttgtccgtgcagga 20000400  T
Q  114 cgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatg 213  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||    
T  20000399 cgcgtggcacgttatgagatgctctcaagaggaggaccacgacgttacttggacaacaacgtgagagagaactaatgatgttgatggtggtgatcacatg 20000300  T
Q  214 acttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagct 272  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||    
T  20000299 acttagacaatcaaactgagctaagcaggtggagctcacatgacctgaacgatcaagct 20000241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 8820713 - 8820938
Alignment:
Q  27 gagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgtt 126  Q
    |||||||||||  ||||||||  |||||||||||| ||||| |||||||||||| ||| ||| ||||||||| ||||| |||||||| | ||||||||||    
T  8820713 gagctgatcaagtttccttgctctgctcgtccgtataaggcacgtggagtcaagggtaaacaactcacgtcacttgtctgtgcaggatgagtggcacgtt 8820812  T
Q  127 atgagatactctcaa-gaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgacttagacaatc 225  Q
    ||||||||| ||||| | || |||||| |||||  |||| ||||| || |||||||| ||||||||||||||| |||| | ||||||||| |  ||||||    
T  8820813 atgagataccctcaagggggtggaccataatgtctcttggacaacgacttgagagagcgctagtgatgttgatagtggagctcacatgacctgaacaatc 8820912  T
Q  226 aaactgagttaagcaggtggagctca 251  Q
    || ||||| ||||||| |||||||||    
T  8820913 aagctgagctaagcagatggagctca 8820938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 20000206 - 20000114
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  20000206 atcaagctgagctaagcaggtggagctcacgtgacctgaacgatcaagttgagttgtacatgttgaatagtcaatgtatataggagtccacgt 20000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 31982332 - 31982185
Alignment:
Q  23 tgtggagctgatcaatattcctt-gcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggc 121  Q
    |||||||||||||| | |||||| ||| |||| ||||||||||| ||||||||||  |||| |  || ||||| ||| ||||| |||||||||||  | |    
T  31982332 tgtggagctgatcacttttcctttgcactgcttgtccgtacaagacgcgtggagtttagagcatgcatctcacatcaattgtctgtgcaggacgcacgac 31982233  T
Q  122 acgttatgagatactctcaagaggaggaccacaatgttacttgaacaa 169  Q
    || ||||||||||||  |||||| ||||||||||| ||||||| ||||    
T  31982232 acattatgagatacttccaagagaaggaccacaatattacttggacaa 31982185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 7850830 - 7850904
Alignment:
Q  58 cgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgaga 132  Q
    ||||||||||||||||||| ||||||||||| ||||| ||| ||||  |||||| || ||||||  |||||||||    
T  7850830 cgtacaaggcgcgtggagtaaagagtacacaactcacatcacttgtttgtgcagcacacgtggcgtgttatgaga 7850904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 7851088 - 7851162
Alignment:
Q  241 ggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||||||||| ||| ||| ||| ||||||||||| | |||||||||||||||| || ||||   ||||||||||    
T  7851088 ggtggagctcacgtggcctaaacgatcaagctgagctatacatgttgaatagtcaatctataggagagtccacgt 7851162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 31981999 - 31981950
Alignment:
Q  245 gagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtc 294  Q
    |||||||||||||||| || ||||| |||||||| || ||||||||||||    
T  31981999 gagctcatgtgacctggacgatcaaactgagatggacttgttgaatagtc 31981950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 8820992 - 8821044
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgag 275  Q
    ||||||||||| |||| |||||||||||| ||||||||||  ||||| |||||    
T  8820992 atcaaactgagctaagtaggtggagctcacgtgacctgaatgatcaacctgag 8821044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 509945 - 509712
Alignment:
Q  18 aggcgtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcg 117  Q
    ||||||||||||||||||||  ||||||||| |||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||     
T  509945 aggcgtgtggagctgatcaagtttccttgcactgcttgtccgtaaaaggcgcgtggagtcaagggtacaccgctcacgtcatttgtccgtgcaggacgca 509846  T
Q  118 tggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgactt 217  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||| || ||||  |||||||| ||||||||||||||||| || | |||||||||||    
T  509845 tggcacgttatgagatgcactcaaaaggaggaccacaatgttacttggaccacaaattgagagagagctagtgatgttgatggcggagctcacatgactt 509746  T
Q  218 agacaatcaaactgagttaagcaggtggagctca 251  Q
    |||||||||||||||  ||||||| | |||||||    
T  509745 agacaatcaaactgaactaagcagatagagctca 509712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 509686 - 509606
Alignment:
Q  235 taagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||||||||||||||| ||||||||||| || ||| |||   ||| ||||||||||||| ||||||||  ||||||||||    
T  509686 taagcaggtggagctcacgtgacctgaacgattaagttgaaccgtatatgttgaatagtcaatgtatatgagagtccacgt 509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 38809836 - 38810094
Alignment:
Q  18 aggcgtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcg 117  Q
    ||||| || |||||||||||  ||||||||| |||||||||||| ||||||| |||||||||| ||||||| ||||||||| |||| ||||||||||| |    
T  38809836 aggcgcgtagagctgatcaagtttccttgcattgctcgtccgtaaaaggcgcatggagtcaagggtacacaactcacgtcacttgttcgtgcaggacgtg 38809935  T
Q  118 tggcacgttatgagatactctcaagaggaggaccacaatg-ttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgact 216  Q
    |||||||||||||||| | ||||||||||||||||||||| || |||| ||||| || |||||||| |||||||||||||||||| | | |||| |||      
T  38809936 tggcacgttatgagatgccctcaagaggaggaccacaatgtttgcttggacaacgacttgagagagagctagtgatgttgatggtagagctcacgtgatc 38810035  T
Q  217 tagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgag 275  Q
    | ||| ||||||||||| ||||||| |||||||||  ||| |||||| |||||||||||    
T  38810036 tggacgatcaaactgagctaagcagatggagctcacatgatctgaacgatcaagctgag 38810094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 33933248 - 33933387
Alignment:
Q  58 cgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatg 157  Q
    ||||||||| || |||||||||| ||| ||| |||| |||| ||||||||||| || | |||||||||||||||||||  ||||||||||||||||||||    
T  33933248 cgtacaaggtgcttggagtcaagggtagacaactcatgtcacttgtccgtgcaagatgggtggcacgttatgagataccttcaagaggaggaccacaatg 33933347  T
Q  158 ttacttgaacaacaacgtgagagagtgctagtgatgttga 197  Q
    || |||| |||||||| |||||||| ||||||||||||||    
T  33933348 ttgcttggacaacaacctgagagagagctagtgatgttga 33933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 38810084 - 38810176
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||| ||||| ||||||| ||||||||| ||||||||||| |||||| |||| |||||||||||||||||| |||||||   ||||||||||    
T  38810084 atcaagctgagctaagcagatggagctcacgtgacctgaacgatcaagttgagctgtacatgttgaatagtcaatgtataggagagtccacgt 38810176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 1807356 - 1807289
Alignment:
Q  248 ctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||| | ||||| | ||||||||||    
T  1807356 ctcatgtgacctgaatgatcaaattgagatgtacatgttgaatagtcaaggtatagaagagtccacgt 1807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 33933422 - 33933460
Alignment:
Q  237 agcaggtggagctcatgtgacctgaacaatcaagctgag 275  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  33933422 agcaggtggagctcaagtgacctgaacgatcaagctgag 33933460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 20634790 - 20634546
Alignment:
Q  58 cgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatg 157  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||  ||| |||| ||||||||| |||||||| ||  |||||||||||||||||| |    
T  20634790 cgtacaaggcgcgtggagtcaagggtacacaactcacgtcacttgtttgtgtaggatgcgtggcacattatgagacaccttcaagaggaggaccacaagg 20634691  T
Q  158 ttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtggagctcatgtgac 257  Q
    || |||| |||||||| |||||||| ||||||||||||||  | || | |||| |||| |  |  |||||||| || ||||||||||||||||| |||||    
T  20634690 ttgcttggacaacaacttgagagagagctagtgatgttgaaagaggagctcacgtgacctgaaagatcaaactaagctaagcaggtggagctcacgtgac 20634591  T
Q  258 ctgaacaatcaagctgagatgtacatgttgaatagtcgatgtata 302  Q
    |||||| ||||| ||||| ||||||||||||||| || |||||||    
T  20634590 ctgaacgatcaaactgagttgtacatgttgaatattcaatgtata 20634546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 40287085 - 40287339
Alignment:
Q  18 aggcgtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcg 117  Q
    ||||||||| |||||||||   ||| ||||| ||||| ||| ||||| ||||||||||||||| ||||||| |||| |||| |||| |||||| || | |    
T  40287085 aggcgtgtgcagctgatcatgtttctttgcactgctcctccatacaaagcgcgtggagtcaagggtacacaactcaagtcacttgttcgtgcaagatgtg 40287184  T
Q  118 tggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgactt 217  Q
    |||||||||||| ||||   |||||||||||||||||||||| |||  ||||||||  ||||||| |||||||| |||||  |||| | ||||||||       
T  40287185 tggcacgttatgcgataacttcaagaggaggaccacaatgttgcttagacaacaaccggagagagagctagtgaggttgaaagtggagctcacatgatcg 40287284  T
Q  218 agacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagct 272  Q
      || |||||| ||   ||||||||||||||| |||||| |||||| ||||||||    
T  40287285 gaacgatcaaattggactaagcaggtggagcttatgtgatctgaacgatcaagct 40287339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 315
Target Start/End: Original strand, 36010787 - 36010992
Alignment:
Q  110 aggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatca 209  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||| |||| ||   |||||| ||||||||||||||   ||  | |||    
T  36010787 aggacgcgtggcatgttatgatatactttcaagaggaggaccacaatgttgcttgatcaacgaccaaagagagagctagtgatgttgacaatgaagctca 36010886  T
Q  210 catgacttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagt 309  Q
    | |||| |  || ||||| ||||||||||||||||||| ||| ||||||| ||| |||||| | || |||||||||||||||||| ||||||| | | ||    
T  36010887 cgtgacctgaacgatcaagctgagttaagcaggtggagttcacgtgacctaaacgatcaagttaagctgtacatgttgaatagtcaatgtataaaagggt 36010986  T
Q  310 ccacgt 315  Q
    ||||||    
T  36010987 ccacgt 36010992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 275
Target Start/End: Original strand, 44078866 - 44079095
Alignment:
Q  50 tgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggagga 149  Q
    |||||||||||||||||| |||||||| ||| | ||  || ||| |||| ||||  |||||||||| ||  |||||||||||||||| ||||| ||||||    
T  44078866 tgctcgtccgtacaaggcacgtggagttaagggcacgtaggtcatgtcacttgtgtgtgcaggacgtgtaacacgttatgagatactttcaaggggagga 44078965  T
Q  150 ccacaatgttacttgaacaacaac----gtgagagagtgctagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtgg 245  Q
    |||||||||| |||| ||||| ||    | ||||||| | ||||||||| ||| |||| | | || |  | |  || ||||||||||| |||||||||||    
T  44078966 ccacaatgttgcttggacaacgacatgagagagagagagttagtgatgtcgattgtggagctaacctatcctgaacgatcaaactgagctaagcaggtgg 44079065  T
Q  246 agctcatgtgacctgaacaatcaagctgag 275  Q
    |||||| ||||||||||| |||||||||||    
T  44079066 agctcacgtgacctgaacgatcaagctgag 44079095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 44079085 - 44079152
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaat 290  Q
    ||||| |||||||||||||||||| |||||||||||||||  ||||||||| |||||||| |||||||    
T  44079085 atcaagctgagttaagcaggtggacctcatgtgacctgaatgatcaagctgcgatgtacacgttgaat 44079152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 40287346 - 40287421
Alignment:
Q  237 agcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtcca 312  Q
    ||||||||||||||| ||||||||||  ||||| ||||| |||||||||||||||||  ||||||| | |||||||    
T  40287346 agcaggtggagctcacgtgacctgaatgatcaaactgagttgtacatgttgaatagtgaatgtatagaagagtcca 40287421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 22466359 - 22466420
Alignment:
Q  241 ggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtata 302  Q
    |||||| ||| ||||||||||||||||||| |||| || | ||||||||||||| |||||||    
T  22466359 ggtggatctcctgtgacctgaacaatcaagttgagttggatatgttgaatagtcaatgtata 22466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 59 - 263
Target Start/End: Complemental strand, 18573559 - 18573355
Alignment:
Q  59 gtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgt 158  Q
    |||| ||||||||||||||||| ||||||| ||||| |||  |||| ||||||||||| |||||||||||||||| | || |||||||||||||||||||    
T  18573559 gtaccaggcgcgtggagtcaagggtacacaactcacatcacctgtcggtgcaggacgcatggcacgttatgagatgccctaaagaggaggaccacaatgt 18573460  T
Q  159 tacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtggagctcatgtgacc 258  Q
    | |||| ||||| || ||||||||  ||||||| ||||||||||| | ||||||||| | ||| ||||||||||| |||| || ||||||||||||||||    
T  18573459 tgcttggacaacgacttgagagagatctagtgacgttgatggtggagctcacatgacctggacgatcaaactgagctaagtagatggagctcatgtgacc 18573360  T
Q  259 tgaac 263  Q
    |||||    
T  18573359 tgaac 18573355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 18573229 - 18573158
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtc 294  Q
    ||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||    
T  18573229 atcaagctgagctaagcaggtggagctcacgtgacctgtacgatcaagctgagttgtacatgttgaatagtc 18573158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 272
Target Start/End: Complemental strand, 3470632 - 3470403
Alignment:
Q  40 ttccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctc 139  Q
    ||||| ||| ||||| ||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||| ||||||||||||| | |||    
T  3470632 ttcctagcactgctcatccgtacaaggcgcgtggagtcaag-gcacacagatcacgtcacttgtccgtgcaggacgcgtgacacgttatgagatgccctc 3470534  T
Q  140 aagaggaggaccacaatgttacttgaacaacaacgtgagagagtgctagtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagc 239  Q
    ||||||||||| |||||||| |||| ||||| || |||||||  |||||||| ||||||||    | ||||||||| | ||  |||||||||||||||||    
T  3470533 aagaggaggacaacaatgttgcttggacaacgacttgagaga--gctagtgacgttgatggcaaagctcacatgacctggatgatcaaactgagttaagc 3470436  T
Q  240 aggtggagctcatgtgacctgaacaatcaagct 272  Q
    || || |||| |||||||||||||  |||||||    
T  3470435 agatgaagcttatgtgacctgaacgttcaagct 3470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 19038499 - 19038677
Alignment:
Q  22 gtgtggagctgatcaatattccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggc 121  Q
    ||||||| ||||||||  ||||||||  ||||| |||||||||| | | |||||||||  ||||| ||||||| | | |||||||||||| |||||||||    
T  19038499 gtgtggatctgatcaagtttccttgccctgctcatccgtacaagacacatggagtcaatggtacatagctcacattacttgtccgtgcagaacgcgtggc 19038598  T
Q  122 acgttatgagatactctcaagaggaggaccaca--atgttacttgaacaacaacgtgagagagtgctagtgatgttgat 198  Q
    |||||||| ||||  |||||||||||||||| |  ||||| |||| ||||| || ||| |||| |||| ||| ||||||    
T  19038599 acgttatgggatatcctcaagaggaggaccataatatgttgcttggacaacgacttgatagagagctaatgacgttgat 19038677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 12529974 - 12530105
Alignment:
Q  65 ggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttg 164  Q
    |||||||| ||||||| ||||||| ||||||||| || |||||||||||| | |||| ||||| | ||||   |||||||| ||||||||||||| |||     
T  12529974 ggcgcgtgaagtcaagggtacacaactcacgtcacttttccgtgcaggacacatggcgcgttacg-gataacttcaagaggtggaccacaatgttgcttt 12530072  T
Q  165 aacaacaacgtgagagagtgctagtgatgttga 197  Q
     |||||||| |||||||| | ||||||||||||    
T  12530073 gacaacaacctgagagagagttagtgatgttga 12530105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 12530179 - 12530244
Alignment:
Q  230 tgagttaagcaggtg--gagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagt 293  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12530179 tgagttaagcaggtgtggagctcacgtgacctgaacgatcaagctgagctgtacatgttgaatagt 12530244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 42494169 - 42494293
Alignment:
Q  24 gtggagctgatcaatattcctt-gcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggca 122  Q
    ||||||||||||| | |||||| ||| ||||||||||||||||||| ||||||| | | | |  || || | |||||||||||||||||||| | |||||    
T  42494169 gtggagctgatcacttttcctttgcactgctcgtccgtacaaggcgtgtggagttatg-gaaggcaacttatgtcatttgtccgtgcaggacacatggca 42494267  T
Q  123 cgttatgagatactctcaagaggagg 148  Q
    |||||||||||||   ||||||||||    
T  42494268 cgttatgagatacatccaagaggagg 42494293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 3470368 - 3470298
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagt 293  Q
    ||||| ||||| ||| ||||||||||||| |||||||| || ||||| ||||| | ||||| |||||||||    
T  3470368 atcaagctgagctaatcaggtggagctcacgtgacctgtacgatcaaactgagctatacatattgaatagt 3470298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 34220276 - 34220393
Alignment:
Q  40 ttccttgcagtgctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctc 139  Q
    ||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||  ||| ||||||||||||    
T  34220276 ttccttgaactgctcgtccgtacaaggcacgtggagtcaagggtacacagctcacgtcacttgtctgtgcaagacgtgtggcgtgttctgagatactctc 34220375  T
Q  140 aagaggaggaccacaatg 157  Q
    ||||||||||||||||||    
T  34220376 aagaggaggaccacaatg 34220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 28549941 - 28550078
Alignment:
Q  60 tacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgtt 159  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||  |||| | ||||||||||||| |||||||||||||||||  |||    
T  28549941 tacaagacgcgtggagtcaagggtacacagctcacgtcacttgtctgtgcaggacttgtggtatgttatgagatactttcaagaggaggaccacagcgtt 28550040  T
Q  160 acttgaacaacaacgtgagagagtgctagtgatgttga 197  Q
      ||  ||||| || | |||||| ||||||||||||||    
T  28550041 gttttcacaacgacttaagagagagctagtgatgttga 28550078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 20130182 - 20130312
Alignment:
Q  52 ctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggacc 151  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| ||| || | ||| || |||| ||||| |||||  |||||   |||||||||| |||    
T  20130182 ctcgtccgtacaaagcgcttggagtcaagggtacacatctcacatcacttattcgtccaagacgtgtggcgcgttactagatatcttcaagaggagaacc 20130281  T
Q  152 acaatgttacttgaacaacaacgtgagagag 182  Q
    |||||||| |||| |||||||| ||||||||    
T  20130282 acaatgttgcttggacaacaacttgagagag 20130312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 22202688 - 22202558
Alignment:
Q  52 ctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggacc 151  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| ||| || | ||| || |||| ||||| |||||  |||||   |||||||||| |||    
T  22202688 ctcgtccgtacaaagcgcttggagtcaagggtacacatctcacatcacttattcgtccaagacgtgtggcgcgttactagatatcttcaagaggagaacc 22202589  T
Q  152 acaatgttacttgaacaacaacgtgagagag 182  Q
    |||||||| |||| |||||||| ||||||||    
T  22202588 acaatgttgcttggacaacaacttgagagag 22202558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 20087748 - 20087865
Alignment:
Q  52 ctcgtccgtacaaggcgcgtggagtcaagagtacacagctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggacc 151  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||| || | ||| || |||| | ||| ||||| ||| |||  |||||||||| |||    
T  20087748 ctcgtccgtacaaggcgcttggagtcaag-gtacacatctcacgtcacttattcgtccaagacgtgcggcgcgttacgagttaccttcaagaggagaacc 20087846  T
Q  152 acaatgttacttgaacaac 170  Q
    |||||||| |||| |||||    
T  20087847 acaatgttgcttggacaac 20087865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 22749100 - 22749161
Alignment:
Q  92 cacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccac 153  Q
    ||||||| |||||||||||||| | |||||||||||||||||||  |||||||||| |||||    
T  22749100 cacgtcacttgtccgtgcaggatgtgtggcacgttatgagataccttcaagaggagaaccac 22749161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 34220478 - 34220530
Alignment:
Q  220 acaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagct 272  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  34220478 acaatcaagctgagctaagcaggtggagctcacgtgacctgaacaataaagct 34220530  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 20088038 - 20088094
Alignment:
Q  238 gcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtc 294  Q
    ||||||| |||||| || || |||||||||||| |||  ||||||||||||||||||    
T  20088038 gcaggtgaagctcacgtaacatgaacaatcaagttgaattgtacatgttgaatagtc 20088094  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 34220439 - 34220491
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgag 275  Q
    |||||||| |||||||||| || ||||| | | ||||||||||||||||||||    
T  34220439 atcaaactaagttaagcagatgaagctcgttttacctgaacaatcaagctgag 34220491  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 274
Target Start/End: Original strand, 5538867 - 5539051
Alignment:
Q  88 agctcacgtcatttgtccgtgcaggacgcgtggcacgttatgagatactctcaagaggaggaccacaatgttacttgaacaacaacgtgagagagtgcta 187  Q
    |||| |||||| ||||  |||||||||  ||||||||||||||||||| ||||||||||||| || || ||| |||| ||||| |  ||||||||  |||    
T  5538867 agcttacgtcacttgtgtgtgcaggacatgtggcacgttatgagataccctcaagaggaggatcaaaaagttgcttggacaacgatttgagagag--cta 5538964  T
Q  188 gtgatgttgatggtggtgatcacatgacttagacaatcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctga 274  Q
    |||| ||||||||||| | ||||||||| |  || ||||||||||  | ||||| ||||||||| ||||||||||| ||||| ||||    
T  5538965 gtgacgttgatggtggagctcacatgacctgaacgatcaaactgaactgagcagatggagctcacgtgacctgaacgatcaaactga 5539051  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 5539042 - 5539134
Alignment:
Q  223 atcaaactgagttaagcaggtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcgatgtatataggagtccacgt 315  Q
    ||||||||||  |||||||||| |||||| ||||||||||  |||||| |||| |||||||||||||||||| |||||||   ||||||||||    
T  5539042 atcaaactgaactaagcaggtgaagctcacgtgacctgaatgatcaagttgagttgtacatgttgaatagtcaatgtataggagagtccacgt 5539134  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 21485106 - 21485139
Alignment:
Q  242 gtggagctcatgtgacctgaacaatcaagctgag 275  Q
    |||||||||||||||||||||| |||||||||||    
T  21485106 gtggagctcatgtgacctgaacgatcaagctgag 21485139  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 25699468 - 25699521
Alignment:
Q  242 gtggagctcatgtgacctgaacaatcaagctgagatgtacatgttgaatagtcg 295  Q
    ||||||||| |||||||||||| |||||| | || |||||| ||||||||||||    
T  25699468 gtggagctcttgtgacctgaacgatcaagttaagttgtacacgttgaatagtcg 25699521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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