View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21438_high_18 (Length: 308)
Name: NF21438_high_18
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 37778723 - 37779014
Alignment:
| Q |
1 |
ggtccattttgcttcttttcttcttactctttgtgaactgtaannnnnnnnnncttccattcattcatgcttctttaaacaataatgttaaatttagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37778723 |
ggtccattttgcttcttttcttcttactctttgtgaactgtaatttttttt--cttccattcattcatgcttctttaaacaataatgttaaatttagtga |
37778820 |
T |
|
| Q |
101 |
ctgttttaattggtatatattttattttaaaatgtttcttataattattgtgagaattttcaggaaaaatatgtttacttctttaaaaagcttttccata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37778821 |
ctgttttaattggtatatattttattttaaaatgtttcttataattattgtgagaattttcaggaaaaatatgtttacttcttaaaaaagcttttccata |
37778920 |
T |
|
| Q |
201 |
tctttgtataaataaaaattgttagaaaaataatctcaagacattttgtgaaattcttttaaaaaggcaattccaagcatttattcaaattgat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37778921 |
tctttgtataaataaaaattgttagaaaaataatctcaagacattttgtgaaattcttttaaaaaggaaattccaagcatttattcaaattgat |
37779014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University