View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_high_4 (Length: 546)
Name: NF21438_high_4
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 6781622 - 6781112
Alignment:
| Q |
17 |
catagacaggacctaaatgtattataattcggtaattcttttcaataggaaaacaagactacgtaagcaattcaatttaattttgggccctacaggatta |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6781622 |
catagacaggaccgaaatgtattataattcggtaattcttttcaataggaaaacaagactacgtaagcaatacaatttaattttgggccctacagaatta |
6781523 |
T |
|
| Q |
117 |
cacgtgaagggtaaaacagggacgtgcatataaatagtgcgttagagggccagagaaagtgcgcgcgtgggatacacgcgcttgacggtttgttttccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6781522 |
cacgtgaagggtaaaacagggacgtgcatataaatagtgcgtcagagggccagagaaagtgcgcgcgtgggatacacgcgcttgacggtttgttttccta |
6781423 |
T |
|
| Q |
217 |
aaaacgggtcgaaacgacccgcaactgaaccggttggatccatctagttacttgaat-cagcacgacagaaaattaagcagttacggcaaagttcagcaa |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
6781422 |
aaa-cgggtcgaaacgacccgcaactgaaccggttggatccatctagttacttgaattcagcacaacagaaaattaagcagttagggcaaagttcagcaa |
6781324 |
T |
|
| Q |
316 |
acaaaaaatatatgaatcacaattattcagccttgttttctaaagtgaaaatttcaggcaatcgatttcatgtatatacatatatagaaaacatagagaa |
415 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6781323 |
acaaagaatatatgaatcacaattattcaatcttgttttctaaagtgaaaatttcaggcaatcgatttcatgtatatacatatatagaaaacgtagagaa |
6781224 |
T |
|
| Q |
416 |
aacaaatcgttcaattaaacatggtctcatggataacaggatcgtgcatatttcacactactggcaattattttcataatattcaaattttcaataaaag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6781223 |
aacaaatcgttcaattaaacatggtctcatggataacaggattgtgcatatttcacactactggcaattattttcataatattcaaattttcaataaaag |
6781124 |
T |
|
| Q |
516 |
cttgtgattgtc |
527 |
Q |
| |
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|||||||||||| |
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| T |
6781123 |
cttgtgattgtc |
6781112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 7874396 - 7874476
Alignment:
| Q |
28 |
cctaaatgtattataatt-cggtaattcttttcaa-taggaaaacaagactacgtaagcaattcaatttaattttgggcccta |
108 |
Q |
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|||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |
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| T |
7874396 |
cctaaaagtattataattacggtaattcttttcaaatag--aaacaagactacgtaagcaaattaatttaatcttgggcccta |
7874476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 138 - 527
Target Start/End: Original strand, 25470530 - 25470922
Alignment:
| Q |
138 |
acgtgcatataaata--gtgcgttagagggccagagaaagtgcgcgcgtgggatacacgcgcttgacggtttgttttcctaaaaacgggtcgaaacgacc |
235 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||| ||||||||||||||| |
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| T |
25470530 |
acgtgcatatatatattgtgcgttagagggccagagaaagtgcgcgcgtaggatacacacactggacggtttgttttcctaaaa-cgggtcgaaacgacc |
25470628 |
T |
|
| Q |
236 |
cgcaactgaaccggttggatccatctagttacttgaatcagcacgaca-gaaaattaagcagttacggcaaagttcagcaaacaaaaaatatatgaatca |
334 |
Q |
| |
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|||||||||| ||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| ||| |||||| | |||| |||||||| |
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| T |
25470629 |
tgcaactgaactggttggatctatctagttacagggttcagcacgacttgaaaattaagcagttacggcaaagatcaacaaacatagaatacatgaatca |
25470728 |
T |
|
| Q |
335 |
caattattcagccttgtttt-ctaaagtgaaaatttcaggcaatcgatttcatgtatatacatatatagaaaacatagagaaaacaaatcgttcaattaa |
433 |
Q |
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|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
25470729 |
caattattcaatcttgttttgctaaagtgaaaattgcaggcaatcgatttcatgtatatacatatatagaaaacataaagtaaacaaatcgttcaattag |
25470828 |
T |
|
| Q |
434 |
acatggtctcatggataacaggatcgtgcatatttcacactactggcaatta-ttttcataatattcaaattttcaataaaagcttgtgattgtc |
527 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
25470829 |
acatcgtctcatggataacaggattgtgcatatttcacactattggcaattatttttcataatattc-aattttcaataaaggcttgtgattgtc |
25470922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 25470365 - 25470448
Alignment:
| Q |
28 |
cctaaatgtattataatt-cggtaattcttttcaataggaaaacaagactacgtaagcaattcaatttaattttgggccctacag |
111 |
Q |
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| T |
25470365 |
cctaaatgtattataattactgtaattcttttcaaatagaaaccaaaactacgtaaacaaattaattgaa-tttgggccctacag |
25470448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 478
Target Start/End: Original strand, 38984478 - 38984547
Alignment:
| Q |
412 |
agaaaacaaatcgttcaattaa---acatggtctcatggataacaggatcgtgcatatttcacactactg |
478 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |
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|
| T |
38984478 |
agaaaacaaatcgttcaattagtagacatggtcacatggataacaggattgtgcatatctcatactactg |
38984547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 478
Target Start/End: Original strand, 39015575 - 39015644
Alignment:
| Q |
412 |
agaaaacaaatcgttcaattaa---acatggtctcatggataacaggatcgtgcatatttcacactactg |
478 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |
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| T |
39015575 |
agaaaacaaatcgttcaattagtagacatggtcacatggataacaggattgtgcatatctcatactactg |
39015644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 478
Target Start/End: Original strand, 27756591 - 27756660
Alignment:
| Q |
412 |
agaaaacaaatcgttcaattaa---acatggtctcatggataacaggatcgtgcatatttcacactactg |
478 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||| ||| ||||||| |
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| T |
27756591 |
agaaaacaaatcgttcaattagtagacatggtcacatggataacaagattgtgcatatctcatactactg |
27756660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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