View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_10 (Length: 409)

Name: NF21438_low_10
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_10
NF21438_low_10
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-391)||(5879-6261)
[»] chr6 (8 HSPs)
chr6 (9-321)||(11629443-11629755)
chr6 (9-342)||(11620657-11620990)
chr6 (37-316)||(11671359-11671638)
chr6 (75-319)||(11707724-11707968)
chr6 (48-236)||(12090707-12090895)
chr6 (75-285)||(11665566-11665776)
chr6 (48-236)||(11737184-11737372)
chr6 (165-228)||(11758648-11758711)
[»] scaffold0196 (1 HSPs)
scaffold0196 (37-319)||(15196-15478)
[»] chr8 (1 HSPs)
chr8 (9-321)||(16390911-16391223)
[»] chr1 (1 HSPs)
chr1 (165-313)||(44814096-44814244)


Alignment Details
Target: scaffold0019 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 6261 - 5879
Alignment:
Q  9 agcagagatactacgttgcctctgaaacagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagc 108  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261 agcagagatactacattgcctctgaaaaagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagc 6162  T
Q  109 tgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctca 208  Q
    |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6161 tgcaactataagggcttttgaggaggaagattgtttttttgagaaaaaccttgacctaattgatataaatgctagtgcttttttccatagtttttcctca 6062  T
Q  209 aaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcag 308  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  6061 aaagagtggttgatccaacggttagaaataatcagtgcagttgttcttaccactggagcactttgcatggttatgctccctcctggaacattcacctcag 5962  T
Q  309 gtgagaatttggtcattattttctcggaaatgtcgttgtttgttcgagcattgtaggctaaatcctttatttcaggaattatt 391  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5961 gtgagaatttggtcattattttatcggaaatgtcgtggtttgttcgagcattgtaggctaaatcctttatttcaggaattatt 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 11629755 - 11629443
Alignment:
Q  9 agcagagatactacgttgcctctgaaacagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagc 108  Q
    |||||||||||||| ||||||  | || |||| ||||| ||||||||||||| ||||| || ||||||||||||||||||  |||||||||||| |||||    
T  11629755 agcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggagc 11629656  T
Q  109 tgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctca 208  Q
    |||||| || ||||||||||||||||||||| |         ||| |||||||| ||||||||||  ||||| ||||||||||||||||||||||||||     
T  11629655 tgcaacaattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcg 11629556  T
Q  209 aaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcag 308  Q
    || ||||||| ||| ||||||||||||| ||||||||||||| |||| ||   || ||||||||||||||||||||| || |||||||||||||||||||    
T  11629555 aatgagtggttgatccaacggttagaaacaatcagtgcagttcttctcactgctgcagcactttgcatggttatgcttccccctggaacattcacctcag 11629456  T
Q  309 gtgagaatttggt 321  Q
    |||||||||||||    
T  11629455 gtgagaatttggt 11629443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 11620657 - 11620990
Alignment:
Q  9 agcagagatactacgttgcctctgaaacagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagc 108  Q
    |||||||||||||| ||||||| | || |||| ||||| || |||||||||| ||||| || || ||||| |||||||||   |||||||||||||||||    
T  11620657 agcagagatactactttgcctcagcaaaagaactaatgcggttgaatggcacaacaaaatcctctttagcgaatcatgtagccgaaactgttgctggagc 11620756  T
Q  109 tgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctca 208  Q
    || ||| |||||||||||||||| ||||||| |         ||| |||||||| ||||||||||  ||||| ||||||||||| |||||||||||||||    
T  11620757 tgtaacaataagggcttttgagggggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgctttttttcatagttttgcctca 11620856  T
Q  209 aaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcag 308  Q
    || || |||| ||| ||||| ||||||| | ||||||||||||||||  |   || | ||||||||||||||||||| ||||| ||||||||| ||||||    
T  11620857 aacgaatggttgatccaacgattagaaacactcagtgcagttgttctcgccgctgcaacactttgcatggttatgcttcctcccggaacattcccctcag 11620956  T
Q  309 gtgagaatttggtcattattttctcggaaatgtc 342  Q
    |||||||||||||| ||||| ||||  |||||||    
T  11620957 gtgagaatttggtctttattatctctaaaatgtc 11620990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 316
Target Start/End: Complemental strand, 11671638 - 11671359
Alignment:
Q  37 agaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaa 136  Q
    ||||||||||||||| |||||||| ||||| || ||  ||||||||||||||  |||||||||||||||||||   || |||||||||||| |||||||     
T  11671638 agaagtaatgaggataaatggcacaacaaaatcctctatagctaatcatgtagctgaaactgttgctggagctatgacaataagggcttttaaggaggag 11671539  T
Q  137 gattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaa 236  Q
    | |           ||| ||||||   ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  11671538 gctcattcttttgagaagaacctttgtctaattgatttaaatgctagtgcttttttccatagttttgcttcaaatgagtggttgatccaacggttagaaa 11671439  T
Q  237 taatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcaggtgagaat 316  Q
     |||||||||||| ||||| ||   || |||||||||||| |||||||| ||  ||||||| |||||||||||| |||||    
T  11671438 caatcagtgcagtcgttctcactgctgcagcactttgcatagttatgctaccctctggaactttcacctcaggtaagaat 11671359  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 11707968 - 11707724
Alignment:
Q  75 tagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatat 174  Q
    ||||||||||||||  |||||||||||| ||||| |  || |||||||||||||||||||||||| |         ||| || ||||| |||||||| ||    
T  11707968 tagctaatcatgtagctgaaactgttgccggagcagtgacaataagggcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacat 11707869  T
Q  175 aaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgc 274  Q
     ||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||||||||||||| |||  |||||| ||||||| |   || ||||||||||    
T  11707868 taatgctagtgcattttttcataattttgcctcaaacgagtggttgatccaacggttagaaacaattggtgcaggtgttcttgcctctgcagcactttgc 11707769  T
Q  275 atggttatgctccctcctggaacattcacctcaggtgagaatttg 319  Q
    |||||||| || ||  | || || |||||||| ||||||||||||    
T  11707768 atggttatacttccatcagggactttcacctctggtgagaatttg 11707724  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 12090895 - 12090707
Alignment:
Q  48 ggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaagattgnnnnnn 147  Q
    ||||||||||||| ||||| |||||  | ||||||||||||  |||||||||||||||||||   || ||||| ||||||||||| |||||| |          
T  12090895 ggatgaatggcacaacaaaatcgtccgttgctaatcatgtagctgaaactgttgctggagctatgacaataagagcttttgaggaagaagatcggttttt 12090796  T
Q  148 naggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaa 236  Q
     |  || || |||||  |||||||| | ||||||| |||||| |||||||||||||||||||| || |||  ||| |||||| ||||||    
T  12090795 caacaagaatcttgatttaattgatgtcaatgctactgctttcttccatagttttgcctcaaatgaatggctgatccaacgggtagaaa 12090707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 11665566 - 11665776
Alignment:
Q  75 tagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatat 174  Q
    ||||||||||||||  |||||||||||| ||||| |  || ||||| |||||||||||||||||| |         ||| || ||||| ||||| || ||    
T  11665566 tagctaatcatgtagctgaaactgttgccggagcagtgacaataagagcttttgaggaggaagatcgcttttttgagaagaatcttgatctaatagacat 11665665  T
Q  175 aaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgc 274  Q
     ||||||||||| ||||| |||| |||||||||||| ||||||| ||| | ||||||||||| |||  |||||  | ||||| | | |  ||| ||||||    
T  11665666 taatgctagtgcattttttcataattttgcctcaaatgagtggttgatcctacggttagaaacaataggtgcaagtcttcttgccactacagcgctttgc 11665765  T
Q  275 atggttatgct 285  Q
    |||||||||||    
T  11665766 atggttatgct 11665776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 11737372 - 11737184
Alignment:
Q  48 ggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaagattgnnnnnn 147  Q
    ||||||||||||| ||||| || ||  ||||||||||||||  ||||| |||||||||||||   || ||||||||||| ||||| |||||| |          
T  11737372 ggatgaatggcacaacaaaatcatctatagctaatcatgtagctgaaagtgttgctggagctattacaataagggctttcgaggaagaagatcgtttttt 11737273  T
Q  148 naggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaa 236  Q
     |  || || ||| |  |||||||| | ||||| |||||||| ||||| |||||||| ||||| ||||||| ||| |||||| ||||||    
T  11737272 caacaagaatcttaatttaattgatgtcaatgcgagtgctttcttccacagttttgcatcaaatgagtggttgatccaacgggtagaaa 11737184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 11758648 - 11758711
Alignment:
Q  165 taattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacg 228  Q
    |||||||| | |||||||||||||| ||||| |||||| ||||||| ||||||| ||| |||||    
T  11758648 taattgatgtcaatgctagtgctttcttccacagtttttcctcaaatgagtggttgatccaacg 11758711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 37 - 319
Target Start/End: Original strand, 15196 - 15478
Alignment:
Q  37 agaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagctgcaactataagggcttttgaggaggaa 136  Q
    |||||||||| |||| ||||| || ||||| |||||||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||||||||| |||    
T  15196 agaagtaatgcggataaatggtacaacaaaatcgtcattagctaatcatgtagctgaaacagttgcgggagctgcaacaataagggcttttgaggatgaa 15295  T
Q  137 gattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaa 236  Q
    ||| |         ||| |||||| | ||||||||| | ||||||||| |||||||||||| | |||||||||| ||||||| ||| |||||||||||||    
T  15296 gatcgttcttttgagaagaacctttatctaattgatgttaatgctagttcttttttccatattattgcctcaaatgagtggttgatccaacggttagaaa 15395  T
Q  237 taatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcaggtgagaatttg 319  Q
    ||||||||||| ||||||| ||   || ||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  15396 taatcagtgcaattgttctcaccgctgcagcactttgcatggttatgctccctcctggaacattcacatcgggtgagaatttg 15478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 16391223 - 16390911
Alignment:
Q  9 agcagagatactacgttgcctctgaaacagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggagc 108  Q
    |||||||||||||| ||||||| | || |||||| ||| |||| | |||||| ||||| || |   |||| |||||||||  |||||||||| |||||||    
T  16391223 agcagagatactactttgcctcagcaaaagaagtgatgcggataactggcacaacaaaatcctatgtagcaaatcatgtagctgaaactgtttctggagc 16391124  T
Q  109 tgcaactataagggcttttgaggaggaagattgnnnnnnnaggaaaaaccttgacctaattgatataaatgctagtgcttttttccatagttttgcctca 208  Q
     |  || |||||  ||||||||||||||||| |         ||| || ||||| |||||||| || ||||||||| | ||||| |||| ||||||||||    
T  16391123 agtgacaataagaacttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctca 16391024  T
Q  209 aaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatggagcactttgcatggttatgctccctcctggaacattcacctcag 308  Q
    || ||||||| ||| ||||||||||||| ||| ||||||| ||||||| |   || |||||||||||||||||| || || || || || |||||||| |    
T  16391023 aacgagtggttgatccaacggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctctg 16390924  T
Q  309 gtgagaatttggt 321  Q
    |||||||||||||    
T  16390923 gtgagaatttggt 16390911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 44814096 - 44814244
Alignment:
Q  165 taattgatataaatgctagtgcttttttccatagttttgcctcaaaagagtggtggatacaacggttagaaataatcagtgcagttgttcttacaaatgg 264  Q
    |||||||||| ||||||| | |||| || |||||||||||| | || ||||||| ||| ||||||||||||| | | ||||||||||||||| ||   |     
T  44814096 taattgatatcaatgctactcctttctttcatagttttgccgctaatgagtggttgattcaacggttagaaacagttagtgcagttgttcttgcatcagc 44814195  T
Q  265 agcactttgcatggttatgctccctcctggaacattcacctcaggtgag 313  Q
     ||||||||||||||||| || || |||||||||||| |||| ||||||    
T  44814196 tgcactttgcatggttatacttccacctggaacattctcctctggtgag 44814244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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