View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_11 (Length: 377)

Name: NF21438_low_11
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_11
NF21438_low_11
[»] chr1 (6 HSPs)
chr1 (166-363)||(8295889-8296086)
chr1 (166-358)||(18280623-18280814)
chr1 (18-173)||(8296108-8296263)
chr1 (25-86)||(18280478-18280539)
chr1 (30-110)||(51672451-51672531)
chr1 (53-115)||(33749127-33749189)
[»] chr7 (5 HSPs)
chr7 (29-112)||(19267362-19267445)
chr7 (29-115)||(38602994-38603080)
chr7 (36-108)||(7754213-7754285)
chr7 (33-86)||(30969768-30969821)
chr7 (64-115)||(25913764-25913813)
[»] chr5 (1 HSPs)
chr5 (29-110)||(18345690-18345771)
[»] chr6 (5 HSPs)
chr6 (29-110)||(14536110-14536191)
chr6 (26-110)||(28754727-28754811)
chr6 (31-86)||(5736395-5736450)
chr6 (29-110)||(14518612-14518693)
chr6 (54-86)||(25164297-25164329)
[»] chr2 (2 HSPs)
chr2 (27-116)||(3143232-3143321)
chr2 (25-65)||(35466562-35466602)
[»] chr4 (1 HSPs)
chr4 (31-114)||(23499433-23499516)
[»] chr8 (3 HSPs)
chr8 (59-114)||(7840408-7840462)
chr8 (27-86)||(39421529-39421588)
chr8 (70-110)||(35229421-35229461)
[»] chr3 (2 HSPs)
chr3 (32-110)||(41417138-41417216)
chr3 (36-77)||(8005058-8005099)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 166 - 363
Target Start/End: Complemental strand, 8296086 - 8295889
Alignment:
Q  166 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8296086 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 8295987  T
Q  266 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggatgatgtc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  8295986 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtggtctggtattgtctttgggcttctgttcggataatgtc 8295889  T

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Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 166 - 358
Target Start/End: Original strand, 18280623 - 18280814
Alignment:
Q  166 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 265  Q
    |||||||| ||||| || |||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  18280623 cactttataacatacttcaaatgaattactatgactataatactaagtcctatccaatcatgtttatgttttcttcttctgggttatgagaagaattagt 18280722  T
Q  266 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggatg 358  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  18280723 ttggcctcttgtaggtgtatggtgtcttgaggcatgttgttttacttgga-gggttggtggtctggtattgtctttgggcttctgttcggatg 18280814  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 8296263 - 8296108
Alignment:
Q  18 aagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatctg 117  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  8296263 aagtattgtaagtacataataacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttagaggatccaaatttg 8296164  T
Q  118 tatgtatatatacaattttaagttgttgaaactttaaactgaagaaaacactttat 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  8296163 tatgtatatatacaattttaagttgttgaaactttaaaccgaagaaaacaatttat 8296108  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 18280478 - 18280539
Alignment:
Q  25 gtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 86  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||    
T  18280478 gtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcacttta 18280539  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 51672531 - 51672451
Alignment:
Q  30 tacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    |||||||||||||||||||| |  | ||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||    
T  51672531 tacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacgttacacttaactcactttagaggatcc 51672451  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 33749127 - 33749189
Alignment:
Q  53 agttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 115  Q
    ||||| ||||||||||||||| ||||  |||||||| || | |||||||||||||||||||||    
T  33749127 agttaaaataacaacccttgagtttctgactttatactttagtcactttagaggatccaaatc 33749189  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 19267362 - 19267445
Alignment:
Q  29 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaa 112  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||||||| || |||| | || ||||||||||||||||||||    
T  19267362 gtacatcataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggatccaa 19267445  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 38603080 - 38602994
Alignment:
Q  29 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 115  Q
    |||||| |||||||||||||| |  |||| ||||||||||||||||||||   ||||| | || |||||||||||||||||||||||    
T  38603080 gtacattataacaaatcatgagtttgttaaaataacaacccttgattttcttgctttacacttcactcactttagaggatccaaatc 38602994  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 7754213 - 7754285
Alignment:
Q  36 ataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggat 108  Q
    |||| |||||| || || ||||||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  7754213 ataataaatcacgagtgtgttacaataacaacccttgattttctcattttacacttaactcactttagaggat 7754285  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 30969821 - 30969768
Alignment:
Q  33 atcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 86  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||||    
T  30969821 atcataacaaatcatgagtttgttacaataacaacccttgattttctcacttta 30969768  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 25913813 - 25913764
Alignment:
Q  64 caacccttgattttcccactttataattaactcactttagaggatccaaatc 115  Q
    ||||| ||||||||| |||||||  ||| |||||||||||||||||||||||    
T  25913813 caaccgttgattttctcacttta--atttactcactttagaggatccaaatc 25913764  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 18345771 - 18345690
Alignment:
Q  29 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    |||| |||||||||||||||| |  ||| |||||||||||||||||||||  |||||||| || |||||||||||| |||||    
T  18345771 gtacgtcataacaaatcatgagtttgttgcaataacaacccttgattttcgtactttatactttactcactttagacgatcc 18345690  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 14536191 - 14536110
Alignment:
Q  29 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    |||||||||||||||||| || |  ||| ||||||||||| ||||||||| ||||||| | || |||| |||||||||||||    
T  14536191 gtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcactttacacttcactcgctttagaggatcc 14536110  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 28754811 - 28754727
Alignment:
Q  26 taagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    ||||||||| |||||||||||||  || |||||||||||| || ||||||||  |  |||||| || ||||| ||||||||||||    
T  28754811 taagtacattataacaaatcatgggtgtgttacaataacatcctttgattttatcggtttatattttactcaatttagaggatcc 28754727  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 5736450 - 5736395
Alignment:
Q  31 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 86  Q
    ||||||||||||||||| |||   |||||||||||||| ||||||||| |||||||    
T  5736450 acatcataacaaatcattaatttcttacaataacaaccattgattttctcacttta 5736395  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 14518693 - 14518612
Alignment:
Q  29 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    ||||||||||||||||||||| |   ||| ||||||||  |||||||||| ||||||| | || | ||||||||||| ||||    
T  14518693 gtacatcataacaaatcatgagtttcttataataacaattcttgattttctcactttacactttattcactttagagaatcc 14518612  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 25164329 - 25164297
Alignment:
Q  54 gttacaataacaacccttgattttcccacttta 86  Q
    |||||||||||||||||| ||||||||||||||    
T  25164329 gttacaataacaacccttaattttcccacttta 25164297  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 3143232 - 3143321
Alignment:
Q  27 aagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatct 116  Q
    ||||| |||||||||||||| || |  |||| ||||||||| |||||| ||| ||||||| || | | ||||||||||||||||||||||    
T  3143232 aagtatatcataacaaatcaggagtttgttaaaataacaacacttgatattctcactttacaaattagtcactttagaggatccaaatct 3143321  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35466602 - 35466562
Alignment:
Q  25 gtaagtacatcataacaaatcatgaatgagttacaataaca 65  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  35466602 gtaagtacatcataacaaatcatgaatttgttataataaca 35466562  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 23499433 - 23499516
Alignment:
Q  31 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaat 114  Q
    ||||||||||||||||||| |  |||| ||||||||||||| |||||| ||||||| | || |  ||||||| |||||||||||    
T  23499433 acatcataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacacttcagccactttaaaggatccaaat 23499516  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 7840408 - 7840462
Alignment:
Q  59 aataacaacccttgattttcccactttataattaactcactttagaggatccaaat 114  Q
    ||||||||||||||||||||  |||||| | |||||||||||||||||| ||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagaggagccaaat 7840462  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 39421588 - 39421529
Alignment:
Q  27 aagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 86  Q
    ||||||| ||||||||||||||| |  |||| |||||||||| ||||||||| |||||||    
T  39421588 aagtacaccataacaaatcatgagtttgttaaaataacaacctttgattttctcacttta 39421529  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 35229461 - 35229421
Alignment:
Q  70 ttgattttcccactttataattaactcactttagaggatcc 110  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  35229461 ttgattttctcactttatactttactcactttagaggatcc 35229421  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 41417216 - 41417138
Alignment:
Q  32 catcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 110  Q
    ||||||| ||||||| || |  |||||||||||||||||||||||||  |||||| | ||  ||| |||||||||||||    
T  41417216 catcatagcaaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggatcc 41417138  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 8005058 - 8005099
Alignment:
Q  36 ataacaaatcatgaatgagttacaataacaacccttgatttt 77  Q
    ||||||||||||||||  |||||||||||||||||| |||||    
T  8005058 ataacaaatcatgaatttgttacaataacaacccttaatttt 8005099  T

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