View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_13 (Length: 372)
Name: NF21438_low_13
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 28753218 - 28752862
Alignment:
| Q |
1 |
caggaaaccaaaggcagcttacaatacttctaatggttgtttcaataattcccaaattgctgctaataattcaacttcacggcgtggtagaaaacggaag |
100 |
Q |
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| T |
28753218 |
caggaaactgaagacagcttacaatacttctaatggttgtttcaataattcccaaattgctgctaataattcaacttcacggcgtggtaggaaacggaag |
28753119 |
T |
|
| Q |
101 |
gtaccttacaatacttctgatggttgtctcaataattgccaaactggaaaccttgcccaattacagaatgtatcgattggtgagatgcagtctcagattt |
200 |
Q |
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| T |
28753118 |
gtaccttacaatacttctgatggttgtctcaataattgccaaactggaaaccttgcccaattacagaatgtatcgattggtgagatgcagtctcagattt |
28753019 |
T |
|
| Q |
201 |
gcttagttgccacagatcctgcaggagaaagttgctcaagtgacatgatatatttctttgctgaatttaaaaaattcaccggctgcaacgattctgtttt |
300 |
Q |
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| T |
28753018 |
gcttagctgccacagatcctgcaggagaaagttgctcaagtgacatgatatatttctttgctgaatttaaaaaattcaccggctgcaacgattctgtttt |
28752919 |
T |
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| Q |
301 |
cctggagctgggattatctttagaacaagagcatggtggtgagactgaagtggtaac |
357 |
Q |
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| T |
28752918 |
tctggagctgggattatctttagaacaagagcatggtggtgagactgaagtggtaac |
28752862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 28753304 - 28753163
Alignment:
| Q |
2 |
aggaaaccaaaggcagcttacaatacttctaatggttgtttcaataattcccaaattgctgctaataattcaacttcacggcgtggtagaaaacggaagg |
101 |
Q |
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| T |
28753304 |
aggaaaccaaaggcagcttataatactcctaatgattgtttcaacaattcccaaattgctgctaataattcaacttcacggcgtggcaggaaactgaaga |
28753205 |
T |
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| Q |
102 |
taccttacaatacttctgatggttgtctcaataattgccaaa |
143 |
Q |
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| T |
28753204 |
cagcttacaatacttctaatggttgtttcaataattcccaaa |
28753163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 44865545 - 44865891
Alignment:
| Q |
11 |
aaggcagcttacaatacttctaatggttgtttcaataattcccaaattgctgctaataattcaacttcacggcgtggtagaaaacggaaggtaccttaca |
110 |
Q |
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||||||||||| |||||||| | | | |||| ||| || ||||||| ||| |||||| |||||||||||||| || || ||||| ||| || |||||| |
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| T |
44865545 |
aaggcagcttatgatacttctgacgatgatttccatagttaccaaatttctggtaataactcaacttcacggcgaggaaggaaacgaaagctagcttaca |
44865644 |
T |
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| Q |
111 |
atacttctgatggttgtctcaataattgccaaactggaaaccttgcccaattacagaatgtatcgattggtgagatgcagtctcagatttgcttagttgc |
210 |
Q |
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| T |
44865645 |
atgcttttgatgattgttccaataattaccaaactggaaaccacatccagttacagaatgtatcggtagatgagatgcagtctcaactatgcttagctgc |
44865744 |
T |
|
| Q |
211 |
cacagatcctgcaggagaaagttgctcaagtgacatgatatatttctttgctgaatttaaaaaattcaccggctgcaacgattctgttttcctggagctg |
310 |
Q |
| |
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|| ||||||||||||||||||| ||| |||||||||||||| |||||| | |||||| |||| || |||||| | |||||||||||||| || |||| |
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| T |
44865745 |
caaggatcctgcaggagaaagtttctccagtgacatgatatacttcttttcagaatttgaaaagtttaccggccgtaacgattctgtttttctagagcat |
44865844 |
T |
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| Q |
311 |
ggattatctttagaacaagagcatggtggtgagactgaagtggtaac |
357 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
44865845 |
ggattgtctttagaacaagagcatggtggtgagactggagtagtaac |
44865891 |
T |
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