View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_14 (Length: 365)
Name: NF21438_low_14
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 5636352 - 5636677
Alignment:
| Q |
16 |
tcagatcattgaattcagaattcttcactttcttctgattaaaccagtgttctacgagaacattagctaatgaagtatgcctattcacacttggttggtt |
115 |
Q |
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| T |
5636352 |
tcagatcattgaattcagaattcttcactttcttctgattaaaccagtgttctacgaggacattagctaatgaagtatgcctattcacacttggttggtt |
5636451 |
T |
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| Q |
116 |
tggagtagctttacatttttcacaaaatcaaagcaagtaggaaacattattatttacttagtttcccatgtttaaaagtttatttagggcatgtttgaat |
215 |
Q |
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| T |
5636452 |
tggagtagctttacatttttcacaaaatcaaagcaagtaggaaacattattatttacttagtttcccatgtttaaaagtttatttagggcatgtttgaat |
5636551 |
T |
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| Q |
216 |
tgacaacgagtttgacagtcgagatatgacactgatttttggaaaaatgtgcactttggtgtttaaacaaaatcacggtgccatcatgattttttcaaac |
315 |
Q |
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| T |
5636552 |
tgacaa-------------cgagatatgactctgatttttggaaaaatgtgcactttggtgtttaagcaaaatcactgtgccatcatgattttttcaaac |
5636638 |
T |
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| Q |
316 |
tcaccgttgatccaaacatgcattgggtgtactagtata |
354 |
Q |
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| T |
5636639 |
tcaccgttgatccaaacatgcattggttgtactagtata |
5636677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 3165525 - 3165489
Alignment:
| Q |
281 |
aacaaaatcacggtgccatcatgattttttcaaactc |
317 |
Q |
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| T |
3165525 |
aacaaaatcacggtgtcatcatgattttgtcaaactc |
3165489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 10734607 - 10734535
Alignment:
| Q |
265 |
tgcactttggtgtttaaacaaaatcacggtgccatcatgattttttcaaactcaccgttgatccaaacatgca |
337 |
Q |
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| T |
10734607 |
tgcactttggagcttcaacaaaatcacggtgtcattgtgattttgtcaaacacattgttaatccaaacatgca |
10734535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 38734275 - 38734219
Alignment:
| Q |
281 |
aacaaaatcacggtgccatcatgattttttcaaactcaccgttgatccaaacatgca |
337 |
Q |
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| T |
38734275 |
aacaaaatcatggtgccatggtgattttgtcaaactcaccgtcaatctaaacatgca |
38734219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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