View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_16 (Length: 355)
Name: NF21438_low_16
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 4390630 - 4390959
Alignment:
| Q |
19 |
ttagcaatgctgaaattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggcttagatagaatcttgcagtgnnnnnnnnnn |
118 |
Q |
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| T |
4390630 |
ttagcaatgcagaaattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggtttagatagaatcttgcagtgaaaaaaaaaa |
4390729 |
T |
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| Q |
119 |
ncattggctatagaatcttttgtatcttcccgaatggtctattgttgaattacttaaaggaggttaattggtcaaatgaaactcatagatttgaggatct |
218 |
Q |
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| T |
4390730 |
-cattggctatagaatcttttgtatcttcccgaatggtctattgttgaattacttaagggaggttaattggtcaaatgaaactcatagatttgaggatct |
4390828 |
T |
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| Q |
219 |
ttttgttgggaagttcgggagtagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttgtgttatgtcaagagactagggtc |
318 |
Q |
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| T |
4390829 |
ttttgttgggaagttcggtagcagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttctgttatgtcaagagactagggtc |
4390928 |
T |
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| Q |
319 |
gaagctgtttaaggtctcccttagccctttg |
349 |
Q |
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| T |
4390929 |
gaagttgtttaaggtctcccttaaccctttg |
4390959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 38709316 - 38709353
Alignment:
| Q |
292 |
gttgtgttatgtcaagagactagggtcgaagctgttta |
329 |
Q |
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| T |
38709316 |
gttgtgttatgtcaagggactagggtcgaggctgttta |
38709353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 26501058 - 26501011
Alignment:
| Q |
292 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctccct |
339 |
Q |
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| T |
26501058 |
gttgtgttctgtcaaaggactagggtcgaagttgtttaaggtctccct |
26501011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 29685205 - 29685261
Alignment:
| Q |
292 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagccctttg |
349 |
Q |
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| T |
29685205 |
gttgtgttctgtcaaggaactagggtcgaagctgttt-agatctcccttagccatttg |
29685261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 29685069 - 29685120
Alignment:
| Q |
292 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagcc |
344 |
Q |
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| T |
29685069 |
gttgtgttatgtcaagggactagggtcaaggctgttt-agttctcccttagcc |
29685120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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