View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_17 (Length: 346)
Name: NF21438_low_17
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 5330582 - 5330263
Alignment:
| Q |
19 |
agaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatcaataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaa |
118 |
Q |
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| T |
5330582 |
agaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatcaataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaa |
5330483 |
T |
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| Q |
119 |
gagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgattgttcacttttgtcgataaaacgacgaatcactcgcgagtttgttctgag |
218 |
Q |
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| T |
5330482 |
gagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgattgttcacttttgtcgataaaacgacgaatcacacgcgagtttgttctgag |
5330383 |
T |
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| Q |
219 |
atcatcggtagtggaattc--aaactcgcgcatatttgtggattataaggaagaagaagatactgcatctgtttagttgttctcattactctgtttatgg |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5330382 |
atcatcggtagtggaattctaaaactcgcgcatatttgtggattataaggaagaagaagatactgcatctgtttagttgttctcattactctgtttatgg |
5330283 |
T |
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| Q |
317 |
ccccaagagcttcttctcct |
336 |
Q |
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|||||||||||||||||||| |
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| T |
5330282 |
ccccaagagcttcttctcct |
5330263 |
T |
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