View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_19 (Length: 326)
Name: NF21438_low_19
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 52767714 - 52767438
Alignment:
| Q |
20 |
tagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgt |
119 |
Q |
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| T |
52767714 |
tagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgt |
52767615 |
T |
|
| Q |
120 |
caaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaacatctctctgcgttaccgtttcgtcgtcgagatcatggagaca |
219 |
Q |
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| T |
52767614 |
caaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaacatctctctgcgttaccgtttcgtcgtagagatcatgtagaca |
52767515 |
T |
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| Q |
220 |
attacaaacgacacacagaaactaatcaaggtgcaacctctcttcctttccctcaaccacccatccctaccacaggt |
296 |
Q |
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| T |
52767514 |
attacaaacgacacacagaaattaatcaaggtgcaacctctcttcctttccctcaaccacccatccctaccacaggt |
52767438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 7418666 - 7418510
Alignment:
| Q |
22 |
gtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtca |
121 |
Q |
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| T |
7418666 |
gtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtca |
7418567 |
T |
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| Q |
122 |
aacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
178 |
Q |
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| T |
7418566 |
aactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
7418510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 32482965 - 32483108
Alignment:
| Q |
35 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
134 |
Q |
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|||||| || |||||||||||||| |||||||||||| || | ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| |
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| T |
32482965 |
ttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaa |
32483064 |
T |
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| Q |
135 |
agtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
178 |
Q |
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| T |
32483065 |
agcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
32483108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 13800522 - 13800584
Alignment:
| Q |
205 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
267 |
Q |
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| T |
13800522 |
gagatcatggagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttcctt |
13800584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 8101881 - 8102002
Alignment:
| Q |
35 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
134 |
Q |
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| T |
8101881 |
ttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatgttaag |
8101980 |
T |
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| Q |
135 |
agtacttgggttcccgctgcta |
156 |
Q |
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| T |
8101981 |
agtacttgggttcctgctgcta |
8102002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 39019486 - 39019366
Alignment:
| Q |
36 |
tgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaaga |
135 |
Q |
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| T |
39019486 |
tgtcaagattgtggaaaccaagcaaagaaagattgtagtaatagaaggtgtagaacttgttgtaaaagtagaggttttgattgccctactcatgttaaga |
39019387 |
T |
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| Q |
136 |
gtacttgggttcccgctgcta |
156 |
Q |
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| T |
39019386 |
gtacttgggtacctgctgcta |
39019366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 25570259 - 25570321
Alignment:
| Q |
205 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
267 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||| |
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| T |
25570259 |
gagatcatggagacaattacaaacgacacacataaattaattaaggtgaaacctctcttcctt |
25570321 |
T |
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