View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_2 (Length: 637)
Name: NF21438_low_2
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 49976928 - 49977304
Alignment:
| Q |
18 |
ttcttctcttagacctagctttgagtacttgtttgtaagcatatatcatactaggagaaggnnnnnnnntgaaaggggtagttggtaaagtgataagaaa |
117 |
Q |
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| T |
49976928 |
ttcttctcttagacctagctttgtgtacttttttttaagcatatatcatactaggagaaggaaaaaaaatgaaaggggtagttggtaaagtgataagaaa |
49977027 |
T |
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| Q |
118 |
taaataaatg----------caatgcaatgatgattttgggttattgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaa |
207 |
Q |
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| T |
49977028 |
taaataaatgcaatgcaatgcaatgcaatgatgattttgggttattgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaa |
49977127 |
T |
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| Q |
208 |
agttgcttaaattggatatttggttacaacagttacaggttataaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaa |
307 |
Q |
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| T |
49977128 |
agttgcttaaattggatatttggttacaacagttacaggttataaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaa |
49977227 |
T |
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| Q |
308 |
tgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
384 |
Q |
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| T |
49977228 |
tgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
49977304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 435 - 625
Target Start/End: Original strand, 49977355 - 49977545
Alignment:
| Q |
435 |
caaaagaaaatattccatttcaataaaacctttgatataataataattttattatttttcggtttgatttgatttgtgattgttgtgtggttggtttggg |
534 |
Q |
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| T |
49977355 |
caaaagaaaatattccatttcaataaaacctttgatataataatatttttattatttttcggtttgatttgatttgttattgttgtgtggttggtttggg |
49977454 |
T |
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| Q |
535 |
tgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgcccttcaccta |
625 |
Q |
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| T |
49977455 |
tgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgcccttcaccta |
49977545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 49953557 - 49953468
Alignment:
| Q |
295 |
gaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
384 |
Q |
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| T |
49953557 |
gaaggtctatgaatgtagattctgttccctcaagttctgtaaatctcaggctcttgggggacacatgaaccgtcaccgccaaggctagct |
49953468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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