View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_21 (Length: 308)

Name: NF21438_low_21
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_21
NF21438_low_21
[»] chr4 (1 HSPs)
chr4 (1-294)||(37778723-37779014)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 37778723 - 37779014
Alignment:
Q  1 ggtccattttgcttcttttcttcttactctttgtgaactgtaannnnnnnnnncttccattcattcatgcttctttaaacaataatgttaaatttagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  37778723 ggtccattttgcttcttttcttcttactctttgtgaactgtaatttttttt--cttccattcattcatgcttctttaaacaataatgttaaatttagtga 37778820  T
Q  101 ctgttttaattggtatatattttattttaaaatgtttcttataattattgtgagaattttcaggaaaaatatgtttacttctttaaaaagcttttccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37778821 ctgttttaattggtatatattttattttaaaatgtttcttataattattgtgagaattttcaggaaaaatatgtttacttcttaaaaaagcttttccata 37778920  T
Q  201 tctttgtataaataaaaattgttagaaaaataatctcaagacattttgtgaaattcttttaaaaaggcaattccaagcatttattcaaattgat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37778921 tctttgtataaataaaaattgttagaaaaataatctcaagacattttgtgaaattcttttaaaaaggaaattccaagcatttattcaaattgat 37779014  T

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