View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_22 (Length: 300)
Name: NF21438_low_22
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 29001658 - 29001863
Alignment:
| Q |
18 |
actttggttctcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtagcttcttcaaacttctcccac |
117 |
Q |
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| T |
29001658 |
actttggttctcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtattttcttcaaacttctcccac |
29001757 |
T |
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| Q |
118 |
aaaagcaatagcagcataactttttctgatctcaagcaaacaaccaccattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaac |
217 |
Q |
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| T |
29001758 |
aaaagcaatagcagcataactttttctgatctcaagcaaacaaccaccattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaac |
29001857 |
T |
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| Q |
218 |
cacatc |
223 |
Q |
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|||||| |
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| T |
29001858 |
cacatc |
29001863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 28961971 - 28962059
Alignment:
| Q |
18 |
actttggttctcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtagcttcttcaa |
106 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
28961971 |
actttggttctcaataagaacatggtttacacttcctttcctttacatcattgttaacttcatcattattatcattgtagcttcttcaa |
28962059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 28962082 - 28962149
Alignment:
| Q |
156 |
aacaaccaccattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaaccacatc |
223 |
Q |
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|||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
28962082 |
aacaacaagcattttagaaactaccaccaacccaattgagctagaaaaccaaaccaatgaaccacatc |
28962149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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