View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_26 (Length: 261)
Name: NF21438_low_26
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 28095720 - 28095480
Alignment:
| Q |
1 |
agattatatgcagcatagataacgatttataaaaagaggggaaaataaattattaaagtatggaagnnnnnnnnnngtgtaatcttagtaattgtatctg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
28095720 |
agattatatgcagcatagctaacgatttataaaaagaggggaaaataaattattaaagtagggaa-----aaaaaagtgtaatcttagtaattgtatctg |
28095626 |
T |
|
| Q |
101 |
tttatataaccttgaaaaataaaatatctgagcaaaacatgtctcatgtgttcagatcaatgttga---ctgtatctgagcaataacatcctatgctatc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28095625 |
tttatataaccttgaaaaataaaatatctgagcaaaacatgtctcatgtgttcagatcaatgttgaactctgtatctgagcaataacatcctatgctatg |
28095526 |
T |
|
| Q |
198 |
accattgtcattgccaatgtcctttcacaaccaaagacactgattt |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28095525 |
accattgacattgccaatgtcctttcacaaccaaagacactgattt |
28095480 |
T |
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