View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_28 (Length: 250)

Name: NF21438_low_28
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_28
NF21438_low_28
[»] chr5 (1 HSPs)
chr5 (68-250)||(27754421-27754603)
[»] chr2 (3 HSPs)
chr2 (89-127)||(24792094-24792132)
chr2 (88-120)||(15120147-15120179)
chr2 (90-126)||(44921225-44921261)
[»] chr6 (2 HSPs)
chr6 (156-212)||(29364432-29364487)
chr6 (195-247)||(29879685-29879737)
[»] chr7 (3 HSPs)
chr7 (89-127)||(47754471-47754509)
chr7 (90-127)||(16878812-16878849)
chr7 (88-129)||(46116897-46116937)
[»] chr4 (1 HSPs)
chr4 (87-124)||(23016193-23016230)
[»] chr8 (1 HSPs)
chr8 (87-127)||(41385367-41385407)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 27754603 - 27754421
Alignment:
Q  68 aactacttagcactcatggcccttaaagagtgccctaggggcactcgttagcatttccctgtatttaaagtagagtttgcttatcgtgtgttgtagtaaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  27754603 aactacttagcactcatggcccttaaagagtgccctaggggcactcgttagcatttccatatatttaaagtagagtttgcttatcgtgtgttgtagtaaa 27754504  T
Q  168 tcttacaggctaaaattttacttgtaatgaggcccacacttccagtattcctttgttaccatttagttctatgaatcagacgt 250  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27754503 tcttataggctaaaattttacttgtaatgaggcccacacttccagtattcctttgttaccatttagttctatgaatgagacgt 27754421  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 24792094 - 24792132
Alignment:
Q  89 cttaaagagtgccctaggggcactcgttagcatttccct 127  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  24792094 cttaaagagtgccctaggggcactcgttaacatttccct 24792132  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 15120147 - 15120179
Alignment:
Q  88 ccttaaagagtgccctaggggcactcgttagca 120  Q
    ||||||||||||||||| |||||||||||||||    
T  15120147 ccttaaagagtgccctaagggcactcgttagca 15120179  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 44921261 - 44921225
Alignment:
Q  90 ttaaagagtgccctaggggcactcgttagcatttccc 126  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  44921261 ttaaagagtgccctgggggcactcgttaacatttccc 44921225  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29364487 - 29364432
Alignment:
Q  156 tgttgtagtaaatcttacaggctaaaattttacttgtaatgaggcccacacttccag 212  Q
    ||||||||||||| ||  |||||||||||| ||||||| ||||||||||||||||||    
T  29364487 tgttgtagtaaattttgtaggctaaaattt-acttgtactgaggcccacacttccag 29364432  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 29879685 - 29879737
Alignment:
Q  195 tgaggcccacacttccagtattcctttgttaccatttagttctatgaatcaga 247  Q
    |||| ||||||||| ||| ||||||||| ||||||||| || |||||||||||    
T  29879685 tgagtcccacactttcaggattcctttggtaccatttacttttatgaatcaga 29879737  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 47754509 - 47754471
Alignment:
Q  89 cttaaagagtgccctaggggcactcgttagcatttccct 127  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  47754509 cttaaagagtgccccaggggcactcgttaacatttccct 47754471  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 16878812 - 16878849
Alignment:
Q  90 ttaaagagtgccctaggggcactcgttagcatttccct 127  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  16878812 ttaaagagtgctctaggggcactcgttaacatttccct 16878849  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 46116937 - 46116897
Alignment:
Q  88 ccttaaagagtgccctaggggcactcgttagcatttccctgt 129  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  46116937 ccttaaagagtgccc-aggggcactcgttagcattcccctgt 46116897  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 23016230 - 23016193
Alignment:
Q  87 cccttaaagagtgccctaggggcactcgttagcatttc 124  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  23016230 cccttaaagagtgccttgggggcactcgttagcatttc 23016193  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 41385367 - 41385407
Alignment:
Q  87 cccttaaagagtgccctaggggcactcgttagcatttccct 127  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  41385367 cccttaaagagtgccccgggggcactcgttaacatttccct 41385407  T

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