View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_29 (Length: 242)
Name: NF21438_low_29
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 7077993 - 7077774
Alignment:
| Q |
17 |
attttgttgagagtttatannnnnnnaaccaatccatattaatatcgttagtatttgttgttaatcaggtatctagtctaaggaccgattaat-----gg |
111 |
Q |
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| T |
7077993 |
attttattgagagtttatatttttttaaccgatccatatcaatattgttagtatttgttgttaaccaggtatctgatctaaggaccgattaatctgatgg |
7077894 |
T |
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| Q |
112 |
tccatttattgtcaaatcaaaattctatatggactaatccatccaaagttatcaaactcttacactagtacttttagtattttattatggtgatggtggg |
211 |
Q |
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| T |
7077893 |
tctatttattgtcaaatcaaaattctatatggactaatccacccaaagttatcaaactcttacactagtacttttagtattttattatagtgatggtggg |
7077794 |
T |
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| Q |
212 |
gatcaaactcttgcattctt |
231 |
Q |
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|||||||||||||||||||| |
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| T |
7077793 |
gatcaaactcttgcattctt |
7077774 |
T |
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