View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21438_low_5 (Length: 535)
Name: NF21438_low_5
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21438_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 12819285 - 12819154
Alignment:
| Q |
161 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactaaaagaaaatctctctttgaatgttttcccactctc |
260 |
Q |
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| T |
12819285 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactataagaaaatctctctttgaatgttttcccactctc |
12819186 |
T |
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| Q |
261 |
gattttattgggtgtcttatatatttttaaca |
292 |
Q |
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| T |
12819185 |
gatttcattgggtgtcttatatatttttaaca |
12819154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 12819472 - 12819336
Alignment:
| Q |
16 |
atgaataatactgcatagtactctatgatacatacctcaatggataatgataactgattcatacgaagaatgtcgtggtcctttgacattgttccttata |
115 |
Q |
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| T |
12819472 |
atgaataatactgcatagtacgctatgatacatacctcaattgataatgataactgattcatacgaagaatgccgtggtcctttgacattgttccttata |
12819373 |
T |
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| Q |
116 |
ttgcttttctgatatctttgcatgacctgttgagttt |
152 |
Q |
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| T |
12819372 |
ttgcttttctgagatctttgcaggacctgttgagttt |
12819336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 325 - 434
Target Start/End: Complemental strand, 12819138 - 12819029
Alignment:
| Q |
325 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttctgttgtgtgtaatcacttgactcagtcattttcgtgctt |
424 |
Q |
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| T |
12819138 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttcagttgtgtgtaatcacttgactcagtcattttcgtgctt |
12819039 |
T |
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| Q |
425 |
cttcaactac |
434 |
Q |
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| T |
12819038 |
cttcaactac |
12819029 |
T |
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