View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_6 (Length: 479)

Name: NF21438_low_6
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_6
NF21438_low_6
[»] chr7 (1 HSPs)
chr7 (257-415)||(1342126-1342284)
[»] chr5 (1 HSPs)
chr5 (257-415)||(9394585-9394736)
[»] chr6 (1 HSPs)
chr6 (257-374)||(31944097-31944214)
[»] chr2 (1 HSPs)
chr2 (257-343)||(35535410-35535496)
[»] chr4 (1 HSPs)
chr4 (261-333)||(5644306-5644378)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 257 - 415
Target Start/End: Original strand, 1342126 - 1342284
Alignment:
Q  257 cttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcatcctcactcaattca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1342126 cttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcaccctcactcaattca 1342225  T
Q  357 ctacaaaacacaatcataattcgtatagcagtaaatttcaaatcttgcattaacacaac 415  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1342226 ctacaaaacacaatcataattcatatagcagtaaatttcaaatcttgcattaacacaac 1342284  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 257 - 415
Target Start/End: Original strand, 9394585 - 9394736
Alignment:
Q  257 cttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcatcctcactcaattca 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||| |||||    
T  9394585 cttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttcaaactttcatcctcactcgattca 9394684  T
Q  357 ctacaaaacacaatcataattcgtatagcagtaaatttcaaatcttgcattaacacaac 415  Q
    ||||||||||||||||       |||||||||||||||||||||||||| |||||||||    
T  9394685 ctacaaaacacaatca-------tatagcagtaaatttcaaatcttgcaataacacaac 9394736  T

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Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 31944097 - 31944214
Alignment:
Q  257 cttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcatcctcactcaattca 356  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||||| |||||    
T  31944097 cttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaaactttcatcatcactcgattca 31944196  T
Q  357 ctacaaaacacaatcata 374  Q
    ||||||||||||||||||    
T  31944197 ctacaaaacacaatcata 31944214  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 35535410 - 35535496
Alignment:
Q  257 cttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcatc 343  Q
    |||||||||||||||||  ||||| ||||||| || ||||||||| ||||||||| | || ||||||| ||||||||||||||||||    
T  35535410 cttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaactttcatc 35535496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 5644306 - 5644378
Alignment:
Q  261 acataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttca 333  Q
    |||||||||||||| | ||||||||||| || ||||||||| ||| ||||| | || ||||||||||||||||    
T  5644306 acataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca 5644378  T

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