View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21438_low_7 (Length: 457)

Name: NF21438_low_7
Description: NF21438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21438_low_7
NF21438_low_7
[»] chr1 (5 HSPs)
chr1 (16-368)||(35762228-35762592)
chr1 (383-448)||(35761961-35762026)
chr1 (297-368)||(9537530-9537602)
chr1 (397-448)||(37667098-37667149)
chr1 (294-368)||(37667326-37667400)
[»] chr7 (10 HSPs)
chr7 (16-368)||(18367502-18367866)
chr7 (77-302)||(1323002-1323225)
chr7 (379-448)||(18367239-18367308)
chr7 (379-448)||(21491405-21491474)
chr7 (305-368)||(21491674-21491737)
chr7 (294-368)||(22077632-22077707)
chr7 (295-366)||(48576332-48576404)
chr7 (296-368)||(15874113-15874186)
chr7 (294-368)||(48654404-48654479)
chr7 (294-335)||(12911912-12911953)
[»] chr6 (7 HSPs)
chr6 (16-368)||(23260754-23261120)
chr6 (383-448)||(23260490-23260555)
chr6 (383-448)||(32450174-32450239)
chr6 (296-368)||(26182627-26182700)
chr6 (296-368)||(34636188-34636261)
chr6 (295-368)||(32450439-32450512)
chr6 (296-381)||(24992418-24992503)
[»] chr3 (7 HSPs)
chr3 (170-316)||(8730677-8730823)
chr3 (170-316)||(9082564-9082710)
chr3 (383-448)||(16975504-16975569)
chr3 (295-368)||(5004896-5004970)
chr3 (294-339)||(11968085-11968130)
chr3 (294-368)||(46404738-46404814)
chr3 (396-448)||(11937787-11937839)
[»] chr4 (3 HSPs)
chr4 (379-448)||(49499282-49499351)
chr4 (295-368)||(28969357-28969431)
chr4 (295-368)||(41868570-41868643)
[»] chr5 (3 HSPs)
chr5 (379-446)||(4557883-4557950)
chr5 (294-368)||(4558149-4558223)
chr5 (296-368)||(536731-536804)
[»] chr2 (5 HSPs)
chr2 (295-339)||(28267749-28267793)
chr2 (294-368)||(32735468-32735543)
chr2 (295-329)||(41340858-41340892)
chr2 (295-339)||(12775011-12775056)
chr2 (294-334)||(1193598-1193638)
[»] scaffold0013 (1 HSPs)
scaffold0013 (222-293)||(243402-243473)
[»] scaffold0413 (1 HSPs)
scaffold0413 (294-368)||(8839-8914)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 35762592 - 35762228
Alignment:
Q  16 caccatcctcttgatttaccctacggctccaaacaagatccatagccatcaatttcgctcat------------aactatcattcatcaaatagtttttt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| | ||||            ||||||||||||||||||||||||||    
T  35762592 caccatcctcttgatttaccttacggctccaaacaagatccatggccattaattttgttcatgcttattcctgtaactatcattcatcaaatagtttttt 35762493  T
Q  104 caagtatagtttccttccgttccatgtttcgtgtgacgcaaaggtaacccctttccaaccattcccatatattcttcctatttctattttgtctctaatt 203  Q
     |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35762492 taagtatagttgc-ttccgttccatgtttcgtgtgacacaaaggtaacccctttccaaccattcctatatattcttcctatttctattttgtctctaatt 35762394  T
Q  204 ttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccacgtttgaaaaacaagtcttagaggtaaggg 303  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35762393 ttaggatttatgtttttgaagctttgaactatttctcttgcaaattgtctgtgaggttgttgagtttccacgtttgaaaaacaagtcttagaggtaaggg 35762294  T
Q  304 cttttt-cccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||| |||||| ||||||||||||||||||||| |  |||||||||| ||||||||||||||||    
T  35762293 ctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgt 35762228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 35762026 - 35761961
Alignment:
Q  383 aaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||| |||||||||||||    
T  35762026 aaatgaaaatatagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgt 35761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 9537602 - 9537530
Alignment:
Q  297 gtaagggctttttcc-cataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||||| || |||| ||||||||| |||||||||||||  |||||||||| ||||| ||||||||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgt 9537530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 37667149 - 37667098
Alignment:
Q  397 aaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||| || ||||||||||||||||| |||||| ||| |||||||||||||    
T  37667149 aaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgt 37667098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 37667400 - 37667326
Alignment:
Q  294 gaggtaagggctttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||  |||| |||||| || | ||||||||| |||||| |  |||||||||| ||||||||||||||||    
T  37667400 gaggtaaggctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgt 37667326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 18367866 - 18367502
Alignment:
Q  16 caccatcctcttgatttaccctacggctccaaacaagatccatagccatcaatttcgctcat------------aactatcattcatcaaatagtttttt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||            ||||||||||||||||||||||||||    
T  18367866 caccatcctcttgatttaccttacggctccaaacaagatccatggccattaatttctctcatgcttattcttgtaactatcattcatcaaatagtttttt 18367767  T
Q  104 caagtatagtttccttccgttccatgtttcgtgtgacgcaaaggtaacccctttccaaccattcccatatattcttcctatttctattttgtctctaatt 203  Q
    || |||||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18367766 cacgtatagttgc-ttctgttccatgtttcgtgtgatgcaaaggtaacccctttccaaccattcctatatattcttcctatttctattttgtctctaatt 18367668  T
Q  204 ttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccacgtttgaaaaacaagtcttagaggtaaggg 303  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||||||||||||||    
T  18367667 ttaggatttatgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccgtgttcgaaaaataagtcttagaggtaaggg 18367568  T
Q  304 ctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||| ||| ||||||| |||| ||||||| ||  |||||||||||||||||||||||||||    
T  18367567 ctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgt 18367502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 77 - 302
Target Start/End: Complemental strand, 1323225 - 1323002
Alignment:
Q  77 taactatcattcatcaaatagttttttcaagtatagtttccttccgttccatgtttcgtgtgacgcaaaggtaacccctttccaaccattcccatatatt 176  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||| ||||||| |||  ||||||||||||||||| |||||||||||||| | |||||||    
T  1323225 taactatcattcatcaaatagttttt-caagtctagtttctttc-gttccattttttatgtgacgcaaaggtaacacctttccaaccatttctatatatt 1323128  T
Q  177 cttcctatttctattttgtctctaattttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccacgt 276  Q
    |||  |||| |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||    
T  1323127 ctttttattcctattttgtctctaattttaggatttatatttttgaagctttgaactctttctcttgcaaattgtccgtgaggttgttgagtttttgcgt 1323028  T
Q  277 ttgaaaaacaagtcttagaggtaagg 302  Q
    ||||||||||||||||||||||||||    
T  1323027 ttgaaaaacaagtcttagaggtaagg 1323002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 18367308 - 18367239
Alignment:
Q  379 aaagaaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  18367308 aaagaaatgaaaatatagaaatatgagatttataaaaatatttcattttggttcatatggatgatgatgt 18367239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 21491474 - 21491405
Alignment:
Q  379 aaagaaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||    
T  21491474 aaagaaatgaaaatatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgt 21491405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 21491737 - 21491674
Alignment:
Q  305 tttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  21491737 tttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgt 21491674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 22077632 - 22077707
Alignment:
Q  294 gaggtaagggctttt-tcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  22077632 gaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgt 22077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 366
Target Start/End: Original strand, 48576332 - 48576404
Alignment:
Q  295 aggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattctt 366  Q
    |||||||||||||||||| ||| |||||||||||||||| |||| |  |||||||||| ||||||||||||||    
T  48576332 aggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattctt 48576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 15874186 - 15874113
Alignment:
Q  296 ggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||| ||| || | |||||||||||||||| |  |||||||||| ||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 15874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 48654479 - 48654404
Alignment:
Q  294 gaggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||  || ||||||| | ||| | ||||||||    
T  48654479 gaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgt 48654404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 12911953 - 12911912
Alignment:
Q  294 gaggtaagggctttttcccataagtccatactaagtactagg 335  Q
    |||||||||| ||||||||||| ||||||||||||| |||||    
T  12911953 gaggtaagggttttttcccatacgtccatactaagtgctagg 12911912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 23261120 - 23260754
Alignment:
Q  16 caccatcctcttgatttaccctacggctccaaacaagatccatagccatcaatttcgctcat------------aactatcattcatcaaatagtttttt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||            ||||||||||||||||||||||||||    
T  23261120 caccatcctcttgatttaccttacggctccaaacaagatccatggccattaatttcgctcatgcttattcctataactatcattcatcaaatagtttttt 23261021  T
Q  104 --caagtatagtttccttccgttccatgtttcgtgtgacgcaaaggtaacccctttccaaccattcccatatattcttcctatttctattttgtctctaa 201  Q
      ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23261020 ttcaagtatagttgc-ttccgttccatgtttcgtgtgacgcaaaggtaacccctttccaaccattcctatatattcttcctatttctattttgtctctaa 23260922  T
Q  202 ttttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccacgtttgaaaaacaagtcttagaggtaag 301  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  23260921 ttttaggatttatgcttttgaagctttgaactctttctcctgcaaattgtctgtgaggctgttgagtttccgcgttcgaaaaacaagtcttagaggtaag 23260822  T
Q  302 ggcttttt-cccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||| |||||| || | ||||||||| |||||| |  |||||||||| ||||||||||||||||    
T  23260821 ggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgt 23260754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 23260555 - 23260490
Alignment:
Q  383 aaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||    
T  23260555 aaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtggatgatgatgt 23260490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 32450239 - 32450174
Alignment:
Q  383 aaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||||    
T  32450239 aaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgt 32450174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 26182700 - 26182627
Alignment:
Q  296 ggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||  |||||||||| || |||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgt 26182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 34636188 - 34636261
Alignment:
Q  296 ggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||| ||| || | |||||||||||||||| |  |||||||||| ||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 34636261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 32450512 - 32450439
Alignment:
Q  295 aggtaagggctttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||||||| ||| || || | ||||||||||||||||    |||||||||| ||||||||||||||||    
T  32450512 aggtaagggcttttccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgt 32450439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 24992418 - 24992503
Alignment:
Q  296 ggtaagggctttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgtgttgaaaaagaaa 381  Q
    |||||||||||||||||||| ||| ||| |||||||||||   |  |||||||||| | ||||| |||||||| ||  ||||||||    
T  24992418 ggtaagggctttttcccatatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgtttttgaaaagaaa 24992503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 8730677 - 8730823
Alignment:
Q  170 atatattcttcctatttctattttgtctctaattttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtt 269  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||    
T  8730677 atatattcttcctgtttctattatgtctctaattttaggatttatgcttttgaagctttgaactctttctcttgcaagtcgtccgtgaggttgttgattt 8730776  T
Q  270 tccacgtttgaaaaacaagtcttagaggtaagggctttttcccataa 316  Q
    | |||||||||||||||||||||  ||||||||| |||  |||||||    
T  8730777 ttcacgtttgaaaaacaagtctttaaggtaagggttttcccccataa 8730823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 9082564 - 9082710
Alignment:
Q  170 atatattcttcctatttctattttgtctctaattttaggatttctgcttttgaagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtt 269  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||    
T  9082564 atatattcttcctgtttctattatgtctctaattttaggatttatgcttttgaagctttgaactctttctcttgcaagtcgtccgtgaggttgttgattt 9082663  T
Q  270 tccacgtttgaaaaacaagtcttagaggtaagggctttttcccataa 316  Q
    | |||||||||||||||||||||  ||||||||| |||  |||||||    
T  9082664 ttcacgtttgaaaaacaagtctttaaggtaagggttttcccccataa 9082710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 16975504 - 16975569
Alignment:
Q  383 aaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||    
T  16975504 aaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtggatgatgatgt 16975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 5004970 - 5004896
Alignment:
Q  295 aggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||||||||||| ||| || | |||||||||||||||| |  |||||||||| ||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 5004896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 11968130 - 11968085
Alignment:
Q  294 gaggtaagggctttttcccataagtccatactaagtactaggatga 339  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  11968130 gaggtaagggttttttcccatacgtccatactaagtactaggatga 11968085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 46404814 - 46404738
Alignment:
Q  294 gaggtaagggcttttt--cccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||  |||||| || | |||||||||||||||| |  |||||||||| ||||||||||||||||    
T  46404814 gaggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 46404738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 11937839 - 11937787
Alignment:
Q  396 gaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    ||||||| || ||||||||||||||| |||||||||||| |||||||||||||    
T  11937839 gaaatatgagttttatgaaaatattttattttggttcatgtggatgatgatgt 11937787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 49499282 - 49499351
Alignment:
Q  379 aaagaaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgatgt 448  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||    
T  49499282 aaagaaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgt 49499351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 28969431 - 28969357
Alignment:
Q  295 aggtaagggctttttcc-cataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||  |||||||||| ||||||| ||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgt 28969357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 41868570 - 41868643
Alignment:
Q  295 aggtaagggctttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||  || ||||||| | ||||| ||||||||    
T  41868570 aggtaagtgctttttcccatacgtccatactaagtattaggatgatgttgtgaattagaagtagaaattcttgt 41868643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 4557950 - 4557883
Alignment:
Q  379 aaagaaatgaaaatatagaaatattagatttatgaaaatatttcattttggttcatatggatgatgat 446  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||    
T  4557950 aaagaaatgaaaatatataaatatgagttttatgaaaatatttcattttggttcatgtggatgatgat 4557883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 4558223 - 4558149
Alignment:
Q  294 gaggtaagggctttttcccataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||  |||||| ||| ||||||||||||||||    
T  4558223 gaggtaagggctttttcccatacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgt 4558149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 536731 - 536804
Alignment:
Q  296 ggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||| ||| || | |||||||||||||||| |  |||||||||| ||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 536804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 28267793 - 28267749
Alignment:
Q  295 aggtaagggctttttcccataagtccatactaagtactaggatga 339  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  28267793 aggtaagggttttttcccatacgtccatactaagtactaggatga 28267749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 32735543 - 32735468
Alignment:
Q  294 gaggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||||| ||| || | |||||||| ||||||| |  |||||||||| ||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgt 32735468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 41340892 - 41340858
Alignment:
Q  295 aggtaagggctttttcccataagtccatactaagt 329  Q
    ||||||||||||||||||||| |||||||||||||    
T  41340892 aggtaagggctttttcccatacgtccatactaagt 41340858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 12775056 - 12775011
Alignment:
Q  295 aggtaagggctttttccc-ataagtccatactaagtactaggatga 339  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatga 12775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 1193598 - 1193638
Alignment:
Q  294 gaggtaagggctttttcccataagtccatactaagtactag 334  Q
    ||||||||||||||||||||||||| | |||||||| ||||    
T  1193598 gaggtaagggctttttcccataagttcttactaagtgctag 1193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 243473 - 243402
Alignment:
Q  222 aagctttgaactctttctcttgcaaattgtccgtgaggctgttgagtttccacgtttgaaaaacaagtctta 293  Q
    ||||||||||||||||||||||||| |  | | ||||| ||||||| || ||| ||||||||||||||||||    
T  243473 aagctttgaactctttctcttgcaagtccttcttgaggttgttgagctttcacatttgaaaaacaagtctta 243402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 8839 - 8914
Alignment:
Q  294 gaggtaagggctttttccc-ataagtccatactaagtactaggatgaccttatgaattaaaggtagagattcttgt 368  Q
    ||||||||||||||||||| ||| || | |||||||||||||||| |  |||||||||| ||||| | ||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgt 8914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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