View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_high_18 (Length: 229)
Name: NF21439_high_18
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_high_18 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 2488652 - 2488863
Alignment:
| Q |
18 |
gcttacctctctcttcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagtctcaatttgaagcggatatgaagaag |
117 |
Q |
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| T |
2488652 |
gcttacctctctcttcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagtctcaatttgaagcggatatgaagaag |
2488751 |
T |
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| Q |
118 |
atacagattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcagacacaatgg |
217 |
Q |
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| T |
2488752 |
atacagattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcagacacaatgg |
2488851 |
T |
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| Q |
218 |
ttctcagtaact |
229 |
Q |
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|||||||||||| |
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| T |
2488852 |
ttctcagtaact |
2488863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 41592511 - 41592310
Alignment:
| Q |
28 |
ctcttcccttacaacatagaaatcaaaccaccagaagatgaatctcgtcttgtcagctggaagtctcaatttgaagcggatatgaagaagatacagattc |
127 |
Q |
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| T |
41592511 |
ctcttcccgtacgatatagaaatcagacctccggaagatgaatcacatctcgtcagctggaagtcacaattggaagaggatatgaagatgatacaagttc |
41592412 |
T |
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| Q |
128 |
aagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcagacacaatggttctcagtaa |
227 |
Q |
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| T |
41592411 |
aggataataaaaatcatattacggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaagacacaatggttctcagtaa |
41592312 |
T |
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| Q |
228 |
ct |
229 |
Q |
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|| |
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| T |
41592311 |
ct |
41592310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 8842970 - 8842882
Alignment:
| Q |
133 |
aacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcagacacaatggttct |
221 |
Q |
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| T |
8842970 |
aacaagaaccatatcatggaagtccttgcagccaattatcttgatattcatgacattgattccatctgtgtagcggacacaatggttct |
8842882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 32248453 - 32248412
Alignment:
| Q |
165 |
caatgatcttgattgtcatgacctggattccatctgtgtagc |
206 |
Q |
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| T |
32248453 |
caatgatctcgattgtcatgacctggattccatctgtgtagc |
32248412 |
T |
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