View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_high_3 (Length: 452)
Name: NF21439_high_3
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 5 - 437
Target Start/End: Original strand, 56327301 - 56327733
Alignment:
| Q |
5 |
catcaaagagggattcagatttattcataacaagaataggtttaagttgaggtgcatttttgcgcaaccattttccaacttcctgatcaagaggatgaag |
104 |
Q |
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| T |
56327301 |
catcaaagagggattcagatttattcataacaagaataggtttaagttgaggtgcatttttgcgcaaccattttccaacttcctgatcaagaggatgaag |
56327400 |
T |
|
| Q |
105 |
accagctctagcatcagtgaggaagagtaaggaatgagaagtagacaagacattagcagtgaaagaagcagttctatggagaatggaaccagaagtggct |
204 |
Q |
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| T |
56327401 |
accagctctagcatcagtgaggaagagtaaggaatgagaagtagacaagacattagcagtgaaagaagcagttctatggagaatggaaccagaagtggct |
56327500 |
T |
|
| Q |
205 |
tcagcttccaaaccagcagagtccaaaactctgaaacgcaagtgacctaatttggcgactccttcacgaatgtcgcgggtgacatgatcgtcgggtgtgt |
304 |
Q |
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| T |
56327501 |
tcagcttccaaaccagcagagtccaaaactctgaaacgcaagtgacctaatttggcgactccttcacgaatgtcgcgggtgacatgatcgtcgggtgtgt |
56327600 |
T |
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| Q |
305 |
tgtaaacaagagcctcccttcgacgaatgagacgattaaagagtgctgatttgccgacgttaggtcgaccgagaatgatgacggtgggaagacgagatat |
404 |
Q |
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| T |
56327601 |
tgtaaacaagagcctcccttcgacgaatgagacgattaaagagtgctgattttccgacgttaggtcgaccgagaatgatgacggtggggagacgagatat |
56327700 |
T |
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| Q |
405 |
ttcaactttagtaaaatccaagttcttcttctt |
437 |
Q |
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| T |
56327701 |
ttcaactttagtaaaatccaagttcttcttctt |
56327733 |
T |
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