View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21439_high_4 (Length: 426)
Name: NF21439_high_4
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Original strand, 1906898 - 1907303
Alignment:
| Q |
7 |
agtgatttattcaaattccactgcactatagtgctgtagtgctatagccgctatttaacaacttcggccaagaaaattggttaaaactacattttttgca |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
1906898 |
agtgatttgttcaaattccactgcactatagtgctgtagtgctatagccgctatttaacaacttcggccaagaaaattgtttaaaactacatttttcgca |
1906997 |
T |
|
| Q |
107 |
gagctttatatttatgaaacaccttagtttattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaa |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1906998 |
gtgctttatatttatgaaacaccttagtttatagtccacttatttgttttcttgttatcattgcaattaaggatggaaaagttagctgcaaagagtagaa |
1907097 |
T |
|
| Q |
204 |
gtagtaatgctaaggtaataggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttca |
303 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1907098 |
gtagcaatgcaaaggtagtaggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttca |
1907197 |
T |
|
| Q |
304 |
tcaactaattggctttctcaagtcagtggattcaagttggatcattgctggcattctcctaatatttgactattttctgtcttcactatggtacatttta |
403 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907198 |
tcaaccagctggctttctcaagtcagtggattcaagttgggccattgctggcattctcctaatatttgactattttctgtcttcactatggtacatttta |
1907297 |
T |
|
| Q |
404 |
ctggta |
409 |
Q |
| |
|
|||||| |
|
|
| T |
1907298 |
ctggta |
1907303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 130 - 409
Target Start/End: Original strand, 1902788 - 1903070
Alignment:
| Q |
130 |
ttagtttattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatgctaaggtaatagga |
226 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||| ||||| |
|
|
| T |
1902788 |
ttagtttatagtccacttatttgttttcttgttatcattgcaattaaggatggaaaagttagctgcaaagagtagaagtagcaatgcaaaggtagtagga |
1902887 |
T |
|
| Q |
227 |
agcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaagt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
1902888 |
agcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcaagt |
1902987 |
T |
|
| Q |
327 |
cagtggattcaagttggatcattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggta |
409 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1902988 |
cagtggattcaagttgggccattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggta |
1903070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 116 - 411
Target Start/End: Original strand, 1897281 - 1897582
Alignment:
| Q |
116 |
atttatgaaacaccttagtttattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatg |
212 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
1897281 |
atttatgaaacatctcagtctattgtccacttattttgtttcctcttatcattgcaattaaggatggaaaagttagctgcaaagagtagaagtagtaatg |
1897380 |
T |
|
| Q |
213 |
ctaaggtaataggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaat |
312 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
1897381 |
ccaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcacttcatcaatcaat |
1897480 |
T |
|
| Q |
313 |
tggctttctcaagtcagtggattcaagttgg---atcattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggta |
409 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1897481 |
tggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctgatagttgactattttctgtcttcactatggtacattttagtggta |
1897580 |
T |
|
| Q |
410 |
ag |
411 |
Q |
| |
|
|| |
|
|
| T |
1897581 |
ag |
1897582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 129 - 409
Target Start/End: Original strand, 1912679 - 1912962
Alignment:
| Q |
129 |
cttagtttattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatgctaaggtaatagg |
225 |
Q |
| |
|
|||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||| || |
|
|
| T |
1912679 |
cttagtctattgtccccttatttgttttcctgttatcattgcaattaagaatggaaaagttagctgcaaagagtagaagcagtaatgctaaggtaattgg |
1912778 |
T |
|
| Q |
226 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaag |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
1912779 |
aagcataatatcaatagcaggtgcttttgtgttgactttctacaaaggacaatccatcatgaattcctcatcacttcatcaaccaattgactttctcaag |
1912878 |
T |
|
| Q |
326 |
tcagtggattcaagttggatcattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggta |
409 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||| || | | |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1912879 |
tctgtggattcaagttgggccattgctggtattctgctgacaattgactattttctggtttcactatggtacattttacaggta |
1912962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 130 - 374
Target Start/End: Original strand, 1891858 - 1892105
Alignment:
| Q |
130 |
ttagtttattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatgctaaggtaatagga |
226 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||| ||||| |
|
|
| T |
1891858 |
ttagtttatagtccacttatttgttttcttgttatcattgcaattaaggatggaaaagttagctgcaaagagtagaagtagcaatgcaaaggtagtagga |
1891957 |
T |
|
| Q |
227 |
agcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaagt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| | |
|
|
| T |
1891958 |
agcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatgg |
1892057 |
T |
|
| Q |
327 |
cagtggattcaagttggatcattgctggcattctcctaatatttgact |
374 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||| | |||||| |
|
|
| T |
1892058 |
cagtggattcaagttgggcgattggtggcattctgctaacaattgact |
1892105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 136 - 409
Target Start/End: Original strand, 1879509 - 1879785
Alignment:
| Q |
136 |
tattgtccacttatttgttttcttgttaacattgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatgctaaggtaataggaagcata |
232 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
1879509 |
tattgtccacttatttgttttgctcttatcattgcaattaaggatggaaaagttagctgcaaagagtagaagtagtaatgctaaggtaattggaagcata |
1879608 |
T |
|
| Q |
233 |
atatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaagtcagtgg |
332 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||| || | ||||||||||| | ||| |||||||||||||| || |
|
|
| T |
1879609 |
atctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcatctttacttcatcaaccagttgactttctcaagtcagagg |
1879708 |
T |
|
| Q |
333 |
attcaagttggatcattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggta |
409 |
Q |
| |
|
||||||||||| ||||||||||||| |||| | | | |||||| ||| |||||| |||||||||||| ||||| |
|
|
| T |
1879709 |
attcaagttgggcttttgctggcattcttctaacaatcgtctatttgatgttttcactttggtacattttaatggta |
1879785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 166 - 409
Target Start/End: Original strand, 1886127 - 1886373
Alignment:
| Q |
166 |
attgcaattaaggatggaaaagttagctgcaa---gtcgaagtagtaatgctaaggtaataggaagcataatatcaatagcaggtgcttttgtgatgact |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||||||||||||||| || | || |||||||| ||||||| ||| ||||||||| ||||| |
|
|
| T |
1886127 |
attgtaattaaggatggaaaagttagctgcaaagagtagaagtagtaatgctaagatactggggagcataatctcaatagtaggagcttttgtgttgact |
1886226 |
T |
|
| Q |
263 |
ttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaagtcagtggattcaagttggatcattgctggcattctcc |
362 |
Q |
| |
|
|| ||||||||||| || |||||| ||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
1886227 |
ttttacaaaggaccatccatcatgcattcctcatctcttcatcaaccaattggctttctcaagtcagttgattcaagttgggtcattgctggcattcttc |
1886326 |
T |
|
| Q |
363 |
taatatttgactattttctgtcttcactatggtacattttactggta |
409 |
Q |
| |
|
||| | |||| ||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
1886327 |
taacagttgaatatcttatgttttcactatggtacattttactggta |
1886373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 27039637 - 27039532
Alignment:
| Q |
231 |
taatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaatttctcatcacttcatcaactaattggctttctcaagtcagt |
330 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
27039637 |
taatctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcctcatcacttcatcaaccaattggctttctcaagtcaat |
27039538 |
T |
|
| Q |
331 |
ggattc |
336 |
Q |
| |
|
|||||| |
|
|
| T |
27039537 |
ggattc |
27039532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University