View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_high_5 (Length: 396)
Name: NF21439_high_5
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 31560878 - 31561244
Alignment:
| Q |
15 |
tataaagtactatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
114 |
Q |
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| T |
31560878 |
tataaagtactatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
31560977 |
T |
|
| Q |
115 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggatttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31560978 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctccgtcattactggatttt |
31561076 |
T |
|
| Q |
215 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31561077 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac |
31561176 |
T |
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| Q |
315 |
ata-tctctagactttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaattt |
381 |
Q |
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| T |
31561177 |
atattctctagactttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaattt |
31561244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 31558936 - 31559181
Alignment:
| Q |
50 |
gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaa |
149 |
Q |
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| T |
31558936 |
gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaa |
31559035 |
T |
|
| Q |
150 |
tcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagttacagccct |
249 |
Q |
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| ||| |||| |||||||||||||||||| ||||| |||||| || |||||||||||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
31559036 |
ttggccttctattcttgaattatatttgt-----cttta-tttttccccatcattactggattttggctgtgcaaattattaaatatcagttacagccct |
31559129 |
T |
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| Q |
250 |
ccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaa |
301 |
Q |
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|||||| ||||| ||||||||||||| | ||||||| ||| ||||| ||||| |
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| T |
31559130 |
ccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa |
31559181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 329
Target Start/End: Complemental strand, 31877754 - 31877529
Alignment:
| Q |
106 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcatta |
205 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||| || |||||| |
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| T |
31877754 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-------ttttccccatcatta |
31877662 |
T |
|
| Q |
206 |
ctggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
297 |
Q |
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||||||||||||||| ||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
31877661 |
atggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgt |
31877562 |
T |
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| Q |
298 |
acaacttgaacaatcacata-tctctagacttt |
329 |
Q |
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|||||||| ||||||||||| |||||||||||| |
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| T |
31877561 |
acaacttggacaatcacatattctctagacttt |
31877529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 303
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
| Q |
143 |
aattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagtta |
242 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||| ||||||||| | | |||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
31556020 |
aattgaattggcattctattcttgaattatatttgtc-----tttatttttcc--catcattactggattttggcagtgcaaattaatcagtatcagtta |
31556112 |
T |
|
| Q |
243 |
cagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaact |
303 |
Q |
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|||||||||||| ||||| ||||||||||||| | |||||| ||| ||||||||||||| |
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| T |
31556113 |
cagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact |
31556173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 31877503 - 31877449
Alignment:
| Q |
327 |
tttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaattt |
381 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31877503 |
tttgtggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaattt |
31877449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 31555903 - 31556000
Alignment:
| Q |
45 |
aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataa |
144 |
Q |
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|||||||||||||||||| | ||||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
31555903 |
aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatt-------ttatgtcaattgtatctttgtagataa |
31555994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 31852320 - 31852379
Alignment:
| Q |
202 |
attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac |
261 |
Q |
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| T |
31852320 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac |
31852379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 31559304 - 31559358
Alignment:
| Q |
327 |
tttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaattt |
381 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
31559304 |
tttgtggattcatccaccttggcttagaggatgtaattggtctcaaggttaattt |
31559358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 31559210 - 31559280
Alignment:
| Q |
266 |
ttcactgtcgagaatctatcttcaacctatg----tacaacttgaacaatcacata-tctctagactttgc |
331 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
31559210 |
ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctctagactttgc |
31559280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 31556306 - 31556351
Alignment:
| Q |
336 |
tcatccaccttggcttggaggatgtaatcggtctcaaggtgaattt |
381 |
Q |
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|||||||| ||||||||||||||||||| |||||||| || ||||| |
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| T |
31556306 |
tcatccactttggcttggaggatgtaattggtctcaatgttaattt |
31556351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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