View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_high_8 (Length: 352)
Name: NF21439_high_8
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_high_8 |
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| [»] scaffold0848 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 107 - 344
Target Start/End: Complemental strand, 3980198 - 3979960
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt- |
205 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3980198 |
aagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcatttatttttttt |
3980099 |
T |
|
| Q |
206 |
attaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaac |
305 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3980098 |
attaaattcagttatttaaaataaacaatacaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaac |
3979999 |
T |
|
| Q |
306 |
tttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
3979998 |
tttgtagattctaatcgacatcttgcaactcatctctgc |
3979960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 344
Target Start/End: Complemental strand, 10177559 - 10177321
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt- |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
10177559 |
aagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcagtctccatttctattggtcatttatttttttt |
10177460 |
T |
|
| Q |
206 |
attaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10177459 |
attaaattcagttatttaaaataaacaataaaaaattgaaatatcagtgcaaaagagaaaataacacatttgttgtcatgatcacatattctgtatgaac |
10177360 |
T |
|
| Q |
306 |
tttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
10177359 |
tttgtagattctaatcgacatcttgcaactcatctctgc |
10177321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 108 - 342
Target Start/End: Complemental strand, 29749367 - 29749130
Alignment:
| Q |
108 |
agagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt-- |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
29749367 |
agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcatttattttttttt |
29749268 |
T |
|
| Q |
206 |
-attaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaa |
304 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29749267 |
tattaaatccagttatttaaaataaacaatacaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaa |
29749168 |
T |
|
| Q |
305 |
ctttgtagattctaatcgacatcttgcaactcatctct |
342 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
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| T |
29749167 |
ctttgtagattttaatcgacatcttgcaactcatctct |
29749130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 108 - 344
Target Start/End: Original strand, 10183427 - 10183657
Alignment:
| Q |
108 |
agagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt-a |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
10183427 |
agagaactgctatatggtgcgacatatagcagcgacg-----cacgac--cacctccctcacgtgcactctccatttctattggtcatttatttttttta |
10183519 |
T |
|
| Q |
207 |
ttaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaact |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10183520 |
ttaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattttgtatgaact |
10183619 |
T |
|
| Q |
307 |
ttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
10183620 |
ttgtagattctaatcgacatcttgcaactcatctctgc |
10183657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0848 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 109 - 344
Target Start/End: Original strand, 2446 - 2684
Alignment:
| Q |
109 |
gagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt--- |
205 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
2446 |
gagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctcaatttctattggtcatttatttatttttt |
2545 |
T |
|
| Q |
206 |
attaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaac |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2546 |
attaaattcaattatttaaaataaacaataaaaaagtgaaatatcagtgcataagagaaaataacacatttgctgtcatgatcacatattttgtatgaac |
2645 |
T |
|
| Q |
306 |
tttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2646 |
tttgtagagtctaatcgacatcttgcaactcatctctgc |
2684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 107 - 344
Target Start/End: Complemental strand, 8298711 - 8298472
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt- |
205 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |
|
|
| T |
8298711 |
aagagaactgctatatggtgcgacacatagcagcgacgaaacgcacgacgtcacctccctcatgtgcactctccatttctattgctcatttatttttttt |
8298612 |
T |
|
| Q |
206 |
-attaaattcagttatttaaaataaacaataaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8298611 |
tattaaattcagttatttaaaataaacaattaaaaagtgaaatatcagtgcaaaagagaaaataacacatttgctctcatgatcacatattctgtatgaa |
8298512 |
T |
|
| Q |
305 |
ctttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8298511 |
ctttctagattctaatcgacatcttgcaactcatctctgc |
8298472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 107 - 338
Target Start/End: Original strand, 24791621 - 24791856
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnnattt- |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
24791621 |
aagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctcaatttctattggtcatttatttatttt |
24791720 |
T |
|
| Q |
206 |
--attaaattcagttatttaaaataaacaataaaa-aagtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24791721 |
ttattaaattcagttatttaaaataaacaataaaaaaagtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcacatattttgtatg |
24791820 |
T |
|
| Q |
303 |
aactttgtagattctaatcgacatcttgcaactcat |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24791821 |
aactttgtagattctaatcgacatcttgcaaatcat |
24791856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 24815841 - 24815977
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtcannnnnnna---t |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |
|
|
| T |
24815841 |
aagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctcaatttctattggtcatttatttatttt |
24815940 |
T |
|
| Q |
204 |
ttattaaattcagttatttaaaataaacaataaaaaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24815941 |
ttattaaattcagttatttaaaataaacaataaaaaa |
24815977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 47393293 - 47393197
Alignment:
| Q |
248 |
atcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaactttgtagattctaatcgacatcttgcaactcatctctgc |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
47393293 |
atcagtgcagaagagaaaataacacatttgctgtcatgatcacatattttgtatgaactttgtagattctaatcgacatcttgcaactcatccctgc |
47393197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 47393400 - 47393313
Alignment:
| Q |
107 |
aagagaactgctatatggtgtgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctccatttctattggtca |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
47393400 |
aagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctcaatttctattggtca |
47393313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 11400458 - 11400369
Alignment:
| Q |
16 |
agtacaatattggaattgattgtgattttaaaacacgtgttcccccggcaattcaatgtatagaaatataacaaaatttaataatttatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
11400458 |
agtacaatattggaattgattgtgattttaaaacacatgttcccccggcaattcaatgtatcgaaatataacaaaatttaataatttatg |
11400369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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