View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_1 (Length: 474)
Name: NF21439_low_1
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 21542343 - 21542475
Alignment:
| Q |
326 |
ggaatcaatcttctttgattaaaaatacatgatgacattattattctataacaagcatacaaagatgacattagagattgtgaccctttgactaaaaaga |
425 |
Q |
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| T |
21542343 |
ggaatcaatcttctttgattaaaaatacatcatgacattattattctataacaagcatacaaagatgacattagagattgtgaccctttgactaaaaaga |
21542442 |
T |
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| Q |
426 |
aattatcaatttatcaatatgtatggtgagatg |
458 |
Q |
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| T |
21542443 |
aattatcaatttatcaatatgtatggtgagatg |
21542475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 21542022 - 21542130
Alignment:
| Q |
6 |
agatgaacataaggaagagttagaactt-gaaggatatatgttgtgcttgatgcatatatgaaatgtttttgtttaaaaaagtatagggttaattaaata |
104 |
Q |
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| T |
21542022 |
agatgaacgtaaggaagagttagaactttgaaggatatatgttgtgcttgatgcatatatgaaatgtttttgtttaaaaaagtatagggttaattaaata |
21542121 |
T |
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| Q |
105 |
aatggtccc |
113 |
Q |
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| T |
21542122 |
aatggtccc |
21542130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 21542238 - 21542283
Alignment:
| Q |
221 |
ctattagcatttttaatctctaaaatgctaaaagaaaatgtcccaa |
266 |
Q |
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| T |
21542238 |
ctattagcatttttaatctctaaaacgctaaaagaaaatgtcccaa |
21542283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 23444194 - 23444256
Alignment:
| Q |
365 |
attattctataacaagcatacaaag----atgacattagagattgtgaccctttgactaaaaa |
423 |
Q |
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| T |
23444194 |
attattctttaacaagcatacaaagaaatatgacattagagatagtgaccctttaagtaaaaa |
23444256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 12795312 - 12795247
Alignment:
| Q |
376 |
acaagcatacaaagatgacattagagattgtgaccc-tttgactaaaaagaaattatcaatttatcaa |
442 |
Q |
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| T |
12795312 |
acaaacatacaaagatgaatttagagattgtgacccttttgact--aaatgaattatcaatttatcaa |
12795247 |
T |
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