View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21439_low_10 (Length: 323)
Name: NF21439_low_10
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_10 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 28679 - 28399
Alignment:
| Q |
19 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28679 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
28580 |
T |
|
| Q |
119 |
acttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579 |
acttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaag |
28480 |
T |
|
| Q |
219 |
gttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28479 |
gttggaatttattattttatcaaacttc--------------ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
28399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 275789 - 275509
Alignment:
| Q |
19 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275789 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
275690 |
T |
|
| Q |
119 |
acttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275689 |
acttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaag |
275590 |
T |
|
| Q |
219 |
gttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275589 |
gttggaatttattattttatcaaacttc--------------ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
275509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 26396394 - 26396113
Alignment:
| Q |
19 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396394 |
atgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaact |
26396295 |
T |
|
| Q |
119 |
acttgatcctcaagattcaaaaacaaaaggggcaccg-aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396294 |
acttgatcctcaagattcaaaaacaaaaggggcaccgaaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaa |
26396195 |
T |
|
| Q |
218 |
ggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396194 |
ggttggaatttattatttt--------------atcaaacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
26396113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
111 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
195 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
|
|
| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University