View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_11 (Length: 304)
Name: NF21439_low_11
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 29880301 - 29880003
Alignment:
| Q |
8 |
aaattattctattgacgggacttcctataatttatataaagatatgtatgtatatctctatctcatacaactttcacatatctgatcctatttaattaca |
107 |
Q |
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| T |
29880301 |
aaattagtctattgacgggacttcctataatttatatatagatatgtatgtatatctctatctcatacaactttcacatatctgatcctatttaattaca |
29880202 |
T |
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| Q |
108 |
cttaatttgtggcctagggttgagggaaatgaacaatatatatttccattttgagtttggcctc--tacgatttatgcacaaatttgaagaactaaatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29880201 |
cttaatttgtggcctagggttgagggaaatgaacaatatatatttccattttgagtttggcctctatacgatttatgcacaaatttgaagaactaaatat |
29880102 |
T |
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| Q |
206 |
tggtagacatcgtcgtcaaatttaatgggtgattaattttatcatcagattataaatgagtcagctagctgctacattattctaaactgagaacaatga |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29880101 |
tggtagacatcgtcgtcaaatttaatgggtgattaattttatcatcagattataaatgagtcagctagctgctacattattctaaactgagaacaatga |
29880003 |
T |
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