View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_13 (Length: 239)
Name: NF21439_low_13
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7062962 - 7062831
Alignment:
| Q |
1 |
accatttgacattcatttaaagagaactacagtcgagagccagatatttagattacaaatgatttcctaatagcgtggtaacatcaaaagaattatgctt |
100 |
Q |
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| T |
7062962 |
accatttcacattcatttaaagagaactacagttgagagccagatatttagattacaaatgatttcctaatagcgtggtaacatcaaaagaattatgctt |
7062863 |
T |
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| Q |
101 |
gagaagtgttgacaaaattttatttgatgtgt |
132 |
Q |
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| T |
7062862 |
gagaagtgttgacaaaattttatttgatgtgt |
7062831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 7062830 - 7062799
Alignment:
| Q |
164 |
acatgaaccttgaaaagacaattaaagagaag |
195 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7062830 |
acatgaaccttgaaaagacaattaaagagaag |
7062799 |
T |
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