View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21439_low_16 (Length: 234)
Name: NF21439_low_16
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21439_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 41755058 - 41754860
Alignment:
| Q |
14 |
catcacaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
113 |
Q |
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| T |
41755058 |
catcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
41754959 |
T |
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| Q |
114 |
gactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
213 |
Q |
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| T |
41754958 |
gactaagaaatcatatggtgtatacgac---aacagcaactctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
41754862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 41760936 - 41760770
Alignment:
| Q |
43 |
gtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgaca |
142 |
Q |
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| T |
41760936 |
gtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacagaagtggtcgaagggactaagaaatcatatggtgtgtatgaca |
41760837 |
T |
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| Q |
143 |
acaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctcacc |
215 |
Q |
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| T |
41760836 |
aaaa------ctctgtaaaattgtttgtatttggagactcatatgctgatacaggcaattttatgggctcacc |
41760770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 42225971 - 42225933
Alignment:
| Q |
159 |
aaaattgtttgtatttggagattcatatgctgacacagg |
197 |
Q |
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| T |
42225971 |
aaaattgtttgtctttggagattcatatgcagacacagg |
42225933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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