View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21439_low_17 (Length: 233)

Name: NF21439_low_17
Description: NF21439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21439_low_17
NF21439_low_17
[»] chr2 (12 HSPs)
chr2 (98-219)||(30051098-30051219)
chr2 (98-219)||(30142142-30142263)
chr2 (98-217)||(30045753-30045872)
chr2 (98-217)||(30050916-30051035)
chr2 (98-217)||(30141960-30142079)
chr2 (110-217)||(30045582-30045689)
chr2 (110-217)||(30050745-30050852)
chr2 (110-217)||(30141789-30141896)
chr2 (110-217)||(30243379-30243486)
chr2 (110-199)||(30089177-30089266)
chr2 (110-199)||(30125781-30125870)
chr2 (98-150)||(30243548-30243600)
[»] chr6 (1 HSPs)
chr6 (140-213)||(34008086-34008159)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 30051098 - 30051219
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtac 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30051098 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtac 30051197  T
Q  198 aatatgtgcatggatggaaact 219  Q
    ||||||||||||||||||||||    
T  30051198 aatatgtgcatggatggaaact 30051219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 30142142 - 30142263
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtac 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30142142 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtac 30142241  T
Q  198 aatatgtgcatggatggaaact 219  Q
    ||||||||||||||||||||||    
T  30142242 aatatgtgcatggatggaaact 30142263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 30045753 - 30045872
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtac 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30045753 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtac 30045852  T
Q  198 aatatgtgcatggatggaaa 217  Q
    |||||||||||||| |||||    
T  30045853 aatatgtgcatggacggaaa 30045872  T

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Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 30050916 - 30051035
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtac 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30050916 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtac 30051015  T
Q  198 aatatgtgcatggatggaaa 217  Q
    |||||||||||||| |||||    
T  30051016 aatatgtgcatggacggaaa 30051035  T

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Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 30141960 - 30142079
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtac 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30141960 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtac 30142059  T
Q  198 aatatgtgcatggatggaaa 217  Q
    |||||||||||||| |||||    
T  30142060 aatatgtgcatggacggaaa 30142079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30045582 - 30045689
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  30045582 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatg 30045681  T
Q  210 gatggaaa 217  Q
    || |||||    
T  30045682 gacggaaa 30045689  T

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Target: chr2; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30050745 - 30050852
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  30050745 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatg 30050844  T
Q  210 gatggaaa 217  Q
    || |||||    
T  30050845 gacggaaa 30050852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30141789 - 30141896
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  30141789 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatg 30141888  T
Q  210 gatggaaa 217  Q
    || |||||    
T  30141889 gacggaaa 30141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30243379 - 30243486
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatg 209  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  30243379 ggtatgaaaataaagaatttgagtacaaatttaatcaagttttttattaaagacaaaatgaatgtattgaaaaacaacaaccaagtacaatatgtgcatg 30243478  T
Q  210 gatggaaa 217  Q
    || |||||    
T  30243479 gacggaaa 30243486  T

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Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 30089177 - 30089266
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  30089177 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30089266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 30125781 - 30125870
Alignment:
Q  110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  30125781 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 30243548 - 30243600
Alignment:
Q  98 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagtt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243548 gcaacacaatttggtatgaaaataaagaatttgagtacaaatttcatcaagtt 30243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 34008086 - 34008159
Alignment:
Q  140 ttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatg 213  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||||| |||| |||||    
T  34008086 ttcatcaagttttttattacatgcaaaatgaaggtattgaaaaaccacacctaagtacaatatatgcaaggatg 34008159  T

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